| SRR4457249 | 2nd_leaf | DAH4 | 0.96 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.92 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.52 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.66 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.89 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.23 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.49 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.91 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.73 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.20 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.50 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.95 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.24 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.37 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.15 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.40 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.79 | MC |
| SRR3745125 | anther | wt | 1.10 | MC |
| SRR3745126 | anther | wt | 1.72 | MC |
| SRR3745127 | anther | wt | 1.42 | MC |
| SRR6320498 | carpel | wt | 3.41 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.31 | MC |
| SRR4947495 | root | control | 4.71 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.04 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.58 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 4.33 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 3.06 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.84 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.01 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.83 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.01 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.84 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.48 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.17 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.30 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.59 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.43 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.79 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.63 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.37 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.89 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.25 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.60 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.21 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.94 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.98 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.24 | MC |
| SRR1213691 | flower | wt | 3.62 | MC |
| SRR8240826 | leaf | wild_type | 1.51 | MC |
| SRR8240818 | leaf | wild_type | 2.11 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.95 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.93 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.24 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.95 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.32 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.95 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.99 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.51 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.45 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.72 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.18 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.48 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.61 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.43 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.75 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.99 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.80 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.85 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.55 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.34 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.19 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.81 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.25 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.63 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.09 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.09 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.46 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.79 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.73 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.64 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.79 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.79 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.73 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.64 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.79 | MC |
| SRR1761528 | leaf | drought | 4.79 | MC |
| SRR1761529 | leaf | drought | 3.73 | MC |
| SRR1761530 | leaf | control | 1.64 | MC |
| SRR1761531 | leaf | control | 0.79 | MC |
| SRR504365 | leaf | wt | 3.75 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.13 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.05 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.41 | MC |
| SRR6417967 | leaf | H2O_control | 2.44 | MC |
| SRR6417968 | leaf | H2O_control | 1.47 | MC |
| SRR6417969 | leaf | H2O_control | 2.70 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.48 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.64 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.43 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.85 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.32 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.19 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.69 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.65 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.95 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.82 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.20 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.27 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.68 | MC |
| SRR6502088 | leaf | control | 3.31 | MC |
| SRR6502090 | leaf | control | 2.84 | MC |
| SRR6502101 | leaf | control | 3.10 | MC |
| SRR6502102 | leaf | control | 4.13 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.33 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 4.62 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 7.72 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 5.63 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 5.36 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.37 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.77 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.38 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.17 | MC |
| SRR8582888 | panicle | AM | 0.38 | MC |
| SRR8582889 | panicle | AM | 1.05 | MC |
| SRR8582890 | panicle | AM | 0.77 | MC |
| SRR8582891 | panicle | PM | 3.46 | MC |
| SRR8582892 | panicle | PM | 2.55 | MC |
| SRR8582893 | panicle | PM | 4.36 | MC |
| SRR5110429 | panicle | Dawn | 3.31 | MC |
| SRR5110430 | panicle | Dawn | 2.03 | MC |
| SRR5110431 | panicle | Dawn | 4.24 | MC |
| SRR5110432 | panicle | Dawn | 2.83 | MC |
| SRR4947496 | root | control | 4.05 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.69 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.47 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.14 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.99 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.59 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.67 | MC |
| SRR5110439 | panicle | Dawn + 7h | 5.03 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.53 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.13 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.11 | MC |
| SRR5110448 | panicle | Dusk | 5.42 | MC |
| SRR5110452 | panicle | Dawn + 14h | 5.12 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.93 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.32 | MC |
| SRR5110460 | panicle | Dawn + 21h | 4.68 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.47 | MC |
| SRR5126148 | root | "mock,1_day" | 3.49 | MC |
| SRR5126149 | root | "mock,1_day" | 3.69 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.06 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.66 | MC |
| SRR5126153 | root | "mock,7_days" | 3.49 | MC |
| SRR5126157 | root | "mock,7_days" | 3.83 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.51 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.37 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.98 | MC |
| SRR5126165 | root | "mock,14_days" | 4.63 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.15 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.96 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.93 | MC |
| SRR1213694 | root | wt | 2.94 | MC |
| SRR4947480 | root | control | 4.38 | MC |
| SRR4947482 | root | Al | 1.82 | MC |
| SRR4947484 | root | Al | 5.00 | MC |
| SRR4947485 | root | Al | 4.22 | MC |
| SRR4947488 | root | control | 4.84 | MC |
| SRR4947491 | root | Al | 4.94 | MC |
| SRR4947492 | root | Al | 3.87 | MC |
| SRR4947493 | root | Al | 4.84 | MC |
| SRR4947497 | root | control | 3.97 | MC |
| SRR4947499 | root | Al | 3.41 | MC |
| SRR4947500 | root | Al | 2.89 | MC |
| SRR4947501 | root | Al | 5.36 | MC |
| SRR4947502 | root | control | 5.24 | MC |
| SRR4947503 | root | control | 4.83 | MC |
| SRR4947504 | root | control | 2.47 | MC |
| SRR4947505 | root | control | 5.11 | MC |
| SRR4947507 | root | Al | 4.52 | MC |
| SRR4947508 | root | Al | 3.24 | MC |
| SRR4947509 | root | Al | 3.77 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.03 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.96 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.28 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.38 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.17 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.48 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.67 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.00 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.66 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.40 | MC |
| SRR2154086 | seedling | wt | 4.33 | MC |
| SRR2154082 | seedling | wt | 2.69 | MC |
| SRR2154083 | seedling | wt | 2.22 | MC |
| SRR2154085 | seedling | wt | 2.95 | MC |
| SRR3098741 | seedling | wt | 2.59 | MC |
| SRR3098743 | seedling | wt | 2.50 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.66 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.52 | MC |
| SRR1944583 | seedling | no_treatment | 4.22 | MC |
| SRR358792 | seedling | wt | 2.41 | MC |
| SRR358793 | seedling | wt | 3.11 | MC |
| SRR358794 | seedling | wt | 3.20 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.37 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.17 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.44 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.22 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.55 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 3.39 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.85 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.01 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.39 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.77 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.72 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.20 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.70 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.97 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.77 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.93 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.97 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.41 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.75 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.74 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.81 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.34 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.95 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.31 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.97 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 6.28 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.86 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.39 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 8.09 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 6.65 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.15 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 6.94 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 6.00 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.46 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 7.74 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 7.45 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.73 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.17 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 4.26 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.90 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.38 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 4.31 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.86 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 4.03 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.31 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.87 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.59 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 5.45 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.19 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 6.54 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.75 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 7.22 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 5.36 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.13 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.02 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.43 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 3.24 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 3.52 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.64 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.59 | MC |