| SRR3745126 | anther | wt | 0.63 | MC |
| SRR5560728 | caryopsis | wild_type | 0.44 | MC |
| SRR5560729 | caryopsis | wild_type | 0.88 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.20 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.03 | MC |
| SRR4947495 | root | control | 0.61 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.28 | MC |
| SRR7265400 | coleoptile | 2dA | 1.14 | MC |
| SRR7265401 | coleoptile | 2dA | 1.43 | MC |
| SRR7265402 | coleoptile | 2dA | 0.95 | MC |
| SRR7265404 | coleoptile | 2dN | 0.61 | MC |
| SRR7265406 | coleoptile | 3dA | 1.85 | MC |
| SRR7265407 | coleoptile | 3dA | 1.40 | MC |
| SRR7265408 | coleoptile | 3dA | 1.23 | MC |
| SRR7265409 | coleoptile | 3dN | 1.42 | MC |
| SRR7265410 | coleoptile | 3dN | 1.61 | MC |
| SRR7265411 | coleoptile | 3dN | 1.73 | MC |
| SRR7265412 | coleoptile | 4dA | 3.19 | MC |
| SRR7265413 | coleoptile | 4dA | 2.58 | MC |
| SRR7265414 | coleoptile | 4dA | 1.75 | MC |
| SRR7265415 | coleoptile | 4dN | 2.05 | MC |
| SRR7265416 | coleoptile | 4dN | 1.30 | MC |
| SRR7265417 | coleoptile | 4dN | 1.28 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.34 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.64 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.67 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.46 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.43 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.63 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.04 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.37 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.68 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.36 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.49 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.42 | MC |
| SRR7265394 | embryo | 24hA | 1.34 | MC |
| SRR7265396 | embryo | 24hA | 1.00 | MC |
| SRR7265397 | embryo | 24hN | 0.87 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.32 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.44 | MC |
| SRR8060836 | leaf | wild_type | 0.24 | MC |
| SRR8240826 | leaf | wild_type | 0.23 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.45 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.81 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.59 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.26 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.46 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.52 | MC |
| SRR1213693 | leaf | wt | 0.34 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.75 | MC |
| SRR5856927 | leaf | control | 1.80 | MC |
| SRR5856928 | leaf | control | 1.03 | MC |
| SRR5856929 | leaf | control | 0.80 | MC |
| SRR5856930 | leaf | salt | 0.43 | MC |
| SRR5856931 | leaf | salt | 0.49 | MC |
| SRR5856932 | leaf | salt | 0.66 | MC |
| SRR5856933 | leaf | control | 0.99 | MC |
| SRR5856934 | leaf | control | 1.77 | MC |
| SRR5856935 | leaf | control | 0.86 | MC |
| SRR5856937 | leaf | salt | 0.47 | MC |
| SRR5856938 | leaf | salt | 0.44 | MC |
| SRR6168973 | leaf | none (control) | 0.56 | MC |
| SRR6168974 | leaf | none (control) | 0.36 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.58 | MC |
| SRR6168981 | leaf | none (control) | 0.47 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.44 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.26 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.58 | MC |
| SRR8582889 | panicle | AM | 0.14 | MC |
| SRR8582893 | panicle | PM | 0.25 | MC |
| SRR4947496 | root | control | 1.62 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.51 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.46 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.46 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.69 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.64 | MC |
| SRR5126147 | root | "mock,1_day" | 0.92 | MC |
| SRR5126149 | root | "mock,1_day" | 0.82 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.80 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.78 | MC |
| SRR5126153 | root | "mock,7_days" | 0.92 | MC |
| SRR5126155 | root | "mock,7_days" | 0.96 | MC |
| SRR5126157 | root | "mock,7_days" | 2.89 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.09 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.11 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.54 | MC |
| SRR5126165 | root | "mock,14_days" | 2.01 | MC |
| SRR5126167 | root | "mock,14_days" | 1.17 | MC |
| SRR5126169 | root | "mock,14_days" | 0.76 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.46 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.55 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.85 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.77 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.12 | MC |
| SRR1213694 | root | wt | 0.86 | MC |
| SRR1213695 | root | wt | 0.54 | MC |
| SRR4947478 | root | control | 0.83 | MC |
| SRR4947479 | root | control | 0.67 | MC |
| SRR4947480 | root | control | 2.71 | MC |
| SRR4947481 | root | control | 4.47 | MC |
| SRR4947482 | root | Al | 1.53 | MC |
| SRR4947483 | root | Al | 1.27 | MC |
| SRR4947484 | root | Al | 1.27 | MC |
| SRR4947485 | root | Al | 2.67 | MC |
| SRR4947488 | root | control | 2.96 | MC |
| SRR4947489 | root | control | 2.40 | MC |
| SRR4947490 | root | Al | 0.50 | MC |
| SRR4947491 | root | Al | 1.46 | MC |
| SRR4947493 | root | Al | 2.12 | MC |
| SRR4947497 | root | control | 2.94 | MC |
| SRR4947498 | root | Al | 2.06 | MC |
| SRR4947499 | root | Al | 1.31 | MC |
| SRR4947500 | root | Al | 2.87 | MC |
| SRR4947501 | root | Al | 2.00 | MC |
| SRR4947502 | root | control | 0.83 | MC |
| SRR4947504 | root | control | 1.77 | MC |
| SRR4947505 | root | control | 2.68 | MC |
| SRR4947507 | root | Al | 0.59 | MC |
| SRR4947509 | root | Al | 2.55 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.18 | MC |
| SRR6502106 | root | control | 1.18 | MC |
| SRR6502107 | root | control | 1.35 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.67 | MC |
| SRR2154082 | seedling | wt | 0.91 | MC |
| SRR2154083 | seedling | wt | 0.41 | MC |
| SRR2154085 | seedling | wt | 0.51 | MC |
| SRR3098741 | seedling | wt | 0.37 | MC |
| SRR3098742 | seedling | wt | 0.37 | MC |
| SRR3098743 | seedling | wt | 0.19 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.51 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.86 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.84 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.17 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.74 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.31 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.38 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.33 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.58 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.46 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.17 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.99 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.78 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.84 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.49 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.41 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.15 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.53 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.55 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.23 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.33 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.32 | MC |