| SRR4457250 | 2nd_leaf | DAH4 | 1.40 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.61 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.94 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.27 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.15 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.62 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.75 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.51 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.38 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.73 | MC |
| SRR358795 | callus | wt | 1.21 | MC |
| SRR358796 | callus | wt | 1.41 | MC |
| SRR358797 | callus | wt | 1.54 | MC |
| SRR358798 | callus | wt | 1.32 | MC |
| SRR5560727 | caryopsis | wild_type | 0.38 | MC |
| SRR5560728 | caryopsis | wild_type | 0.31 | MC |
| SRR5560729 | caryopsis | wild_type | 1.08 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.67 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.75 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.48 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.95 | MC |
| SRR7265400 | coleoptile | 2dA | 0.35 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.35 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.41 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.44 | MC |
| SRR7265379 | embryo | 1hN | 0.35 | MC |
| SRR7265381 | embryo | 1hN | 0.29 | MC |
| SRR7265382 | embryo | 3hA | 1.04 | MC |
| SRR7265383 | embryo | 3hA | 0.62 | MC |
| SRR7265384 | embryo | 3hA | 0.76 | MC |
| SRR7265386 | embryo | 3hN | 0.33 | MC |
| SRR7265387 | embryo | 3hN | 0.30 | MC |
| SRR7265388 | embryo | 12hA | 0.45 | MC |
| SRR7265389 | embryo | 12hA | 0.53 | MC |
| SRR7265390 | embryo | 12hA | 0.42 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.14 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.77 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.40 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.17 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.51 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.22 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.72 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.70 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.68 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.02 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.51 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.79 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.49 | MC |
| SRR1213691 | flower | wt | 2.39 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.97 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.96 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.94 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.66 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.03 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.51 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.67 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.72 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.43 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.69 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.66 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.78 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.84 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.83 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.62 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.60 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.79 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.64 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.33 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.52 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.87 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.50 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.49 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.52 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.02 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.08 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.68 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.33 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.82 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.04 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.08 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.48 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.34 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.03 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.34 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.03 | MC |
| SRR1761530 | leaf | control | 1.34 | MC |
| SRR1761531 | leaf | control | 1.03 | MC |
| SRR504365 | leaf | wt | 1.30 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.44 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.56 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.57 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.49 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.42 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.30 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.53 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.47 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.53 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.25 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.10 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.29 | MC |
| SRR1213692 | leaf | wt | 1.35 | MC |
| SRR1213693 | leaf | wt | 0.36 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.43 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.50 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.50 | MC |
| SRR6502088 | leaf | control | 0.84 | MC |
| SRR6502089 | leaf | control | 0.99 | MC |
| SRR6502090 | leaf | control | 0.52 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.03 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.10 | MC |
| SRR6502100 | leaf | control | 0.87 | MC |
| SRR6502101 | leaf | control | 1.00 | MC |
| SRR6502102 | leaf | control | 0.74 | MC |
| SRR6168973 | leaf | none (control) | 0.56 | MC |
| SRR8582888 | panicle | AM | 0.50 | MC |
| SRR8582889 | panicle | AM | 0.31 | MC |
| SRR8582890 | panicle | AM | 0.96 | MC |
| SRR8582891 | panicle | PM | 1.23 | MC |
| SRR8582892 | panicle | PM | 2.49 | MC |
| SRR8582893 | panicle | PM | 0.96 | MC |
| SRR5110431 | panicle | Dawn | 0.85 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.58 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.53 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.98 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.53 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.13 | MC |
| SRR5110445 | panicle | Dusk | 0.62 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.31 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.71 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.63 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.18 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.19 | MC |
| SRR1633182 | panicle | WT | 0.77 | MC |
| SRR1633185 | panicle | WT | 1.08 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.34 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.52 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.08 | MC |
| SRR5126147 | root | "mock,1_day" | 0.63 | MC |
| SRR5126148 | root | "mock,1_day" | 0.61 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.49 | MC |
| SRR5126153 | root | "mock,7_days" | 0.30 | MC |
| SRR5126155 | root | "mock,7_days" | 0.63 | MC |
| SRR5126157 | root | "mock,7_days" | 0.41 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.42 | MC |
| SRR5126169 | root | "mock,14_days" | 0.43 | MC |
| SRR1213695 | root | wt | 0.73 | MC |
| SRR4947492 | root | Al | 1.01 | MC |
| SRR4947501 | root | Al | 0.78 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.54 | MC |
| SRR6502094 | root | control | 0.92 | MC |
| SRR6502095 | root | control | 0.48 | MC |
| SRR6502096 | root | control | 0.41 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.43 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.49 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.39 | MC |
| SRR6502107 | root | control | 0.48 | MC |
| SRR6502108 | root | control | 0.93 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.36 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.44 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.56 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.23 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.33 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.70 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.54 | MC |
| SRR6441554 | seedling | wild_type | 0.68 | MC |
| SRR6441555 | seedling | wild_type | 0.65 | MC |
| SRR2154086 | seedling | wt | 0.61 | MC |
| SRR2154085 | seedling | wt | 0.52 | MC |
| SRR2154087 | seedling | wt | 0.57 | MC |
| SRR3098741 | seedling | wt | 0.77 | MC |
| SRR3098742 | seedling | wt | 1.23 | MC |
| SRR3098743 | seedling | wt | 1.11 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.87 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.79 | MC |
| SRR1944583 | seedling | no_treatment | 0.98 | MC |
| SRR358791 | seedling | wt | 0.79 | MC |
| SRR358792 | seedling | wt | 0.66 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.44 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.76 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.30 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.22 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.28 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.48 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.31 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.45 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.35 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.31 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.64 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.54 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.62 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.58 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.43 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.14 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.36 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.31 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.41 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.48 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.40 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.95 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.05 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.56 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.71 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.70 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 0.96 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.51 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.30 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.05 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.26 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.09 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.07 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.59 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.37 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.10 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.96 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.05 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.44 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.80 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.22 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.52 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.88 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.79 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.95 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.34 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.74 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.51 | MC |