| SRR1740429 | root_meristematic_zone | wt | 2.71 | MC |
| SRR1740428 | root_meristematic_zone | wt | 3.00 | MC |
| SRR6168981 | leaf | none (control) | 0.66 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.12 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.54 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.74 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.29 | MC |
| SRR5856928 | leaf | control | 1.57 | MC |
| SRR5856929 | leaf | control | 1.51 | MC |
| SRR5856927 | leaf | control | 1.56 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.76 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.23 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.45 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.00 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.43 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.36 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.95 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.38 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.03 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.29 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.48 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.03 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.48 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.77 | MC |
| SRR5110431 | panicle | Dawn | 2.71 | MC |
| SRR5110430 | panicle | Dawn | 2.55 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.15 | MC |
| SRR5110432 | panicle | Dawn | 1.86 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.83 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.53 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.28 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.33 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.34 | MC |
| SRR3745125 | anther | wt | 5.62 | MC |
| SRR5560727 | caryopsis | wild_type | 4.04 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.43 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.70 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.76 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.05 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.29 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.22 | MC |
| SRR4947508 | root | Al | 3.81 | MC |
| SRR4947509 | root | Al | 4.64 | MC |
| SRR4947500 | root | Al | 5.12 | MC |
| SRR4947504 | root | control | 4.29 | MC |
| SRR4947506 | root | Al | 3.33 | MC |
| SRR3098742 | seedling | wt | 1.07 | MC |
| SRR3098743 | seedling | wt | 1.01 | MC |
| SRR3098741 | seedling | wt | 0.87 | MC |
| SRR8582888 | panicle | AM | 0.51 | MC |
| SRR8582889 | panicle | AM | 0.16 | MC |
| SRR5126153 | root | "mock,7_days" | 4.11 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.24 | MC |
| SRR5126157 | root | "mock,7_days" | 4.35 | MC |
| SRR5126155 | root | "mock,7_days" | 3.97 | MC |
| SRR6502088 | leaf | control | 0.37 | MC |
| SRR7265408 | coleoptile | 3dA | 1.90 | MC |
| SRR7265407 | coleoptile | 3dA | 2.62 | MC |
| SRR7265406 | coleoptile | 3dA | 3.48 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.66 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.39 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.54 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.14 | MC |
| SRR5110445 | panicle | Dusk | 1.69 | MC |
| SRR5110446 | panicle | Dusk | 1.95 | MC |
| SRR5110447 | panicle | Dusk | 1.53 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.71 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.61 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.93 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.27 | MC |
| SRR5110448 | panicle | Dusk | 2.87 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.49 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.39 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.48 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.78 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.07 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.64 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.59 | MC |
| SRR4947478 | root | control | 3.26 | MC |
| SRR4947479 | root | control | 2.94 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.55 | MC |
| SRR358792 | seedling | wt | 1.02 | MC |
| SRR358791 | seedling | wt | 0.73 | MC |
| SRR2338868 | endosprem | high_temperature | 1.76 | MC |
| SRR6502108 | root | control | 4.73 | MC |
| SRR6502105 | root | 100 mM NaCl | 4.10 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.41 | MC |
| SRR6502101 | leaf | control | 0.61 | MC |
| SRR6502100 | leaf | control | 0.63 | MC |
| SRR2338866 | endosprem | control | 3.19 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.77 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.36 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.30 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.62 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.84 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.68 | MC |
| SRR5856931 | leaf | salt | 1.01 | MC |
| SRR5856930 | leaf | salt | 0.61 | MC |
| SRR5856932 | leaf | salt | 0.70 | MC |
| SRR5856937 | leaf | salt | 0.94 | MC |
| SRR5856936 | leaf | salt | 1.43 | MC |
| SRR4947498 | root | Al | 4.12 | MC |
| SRR4947499 | root | Al | 4.16 | MC |
| SRR4947492 | root | Al | 4.71 | MC |
| SRR4947493 | root | Al | 4.59 | MC |
| SRR4947490 | root | Al | 2.61 | MC |
| SRR4947491 | root | Al | 3.47 | MC |
| SRR4947496 | root | control | 2.91 | MC |
| SRR4947494 | root | control | 2.81 | MC |
| SRR4947495 | root | control | 4.42 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.98 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.49 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.53 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.77 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.97 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.04 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.55 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.68 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.96 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.87 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.06 | MC |
| SRR5126169 | root | "mock,14_days" | 3.95 | MC |
| SRR5126167 | root | "mock,14_days" | 2.88 | MC |
| SRR5126165 | root | "mock,14_days" | 4.38 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 4.15 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.48 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.41 | MC |
| SRR7265388 | embryo | 12hA | 4.27 | MC |
| SRR7265389 | embryo | 12hA | 4.75 | MC |
| SRR7265384 | embryo | 3hA | 2.20 | MC |
| SRR7265385 | embryo | 3hN | 3.00 | MC |
| SRR7265386 | embryo | 3hN | 2.65 | MC |
| SRR7265387 | embryo | 3hN | 2.40 | MC |
| SRR7265380 | embryo | 1hN | 3.37 | MC |
| SRR7265382 | embryo | 3hA | 1.73 | MC |
| SRR7265383 | embryo | 3hA | 2.06 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.32 | MC |
| SRR6168975 | leaf | none (control) | 1.24 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.92 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.42 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.39 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.94 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.03 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.21 | MC |
| SRR1761530 | leaf | control | 1.07 | MC |
| SRR1761531 | leaf | control | 1.34 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.59 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.41 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.54 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.38 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.69 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.63 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.21 | MC |
| SRR504365 | leaf | wt | 1.82 | MC |
| SRR8582891 | panicle | PM | 1.71 | MC |
| SRR8582890 | panicle | AM | 0.38 | MC |
| SRR8582893 | panicle | PM | 1.53 | MC |
| SRR8582892 | panicle | PM | 2.23 | MC |
| SRR2154083 | seedling | wt | 2.62 | MC |
| SRR2154082 | seedling | wt | 3.34 | MC |
| SRR2154087 | seedling | wt | 3.02 | MC |
| SRR2154086 | seedling | wt | 3.03 | MC |
| SRR2154085 | seedling | wt | 2.51 | MC |
| SRR2154084 | seedling | wt | 3.50 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.96 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.63 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 4.47 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.08 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 4.08 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.33 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 6.78 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.24 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.24 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.84 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.39 | MC |
| SRR6320473 | carpel | wt | 4.14 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.36 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.98 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.08 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.07 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.36 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.73 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.95 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.15 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.19 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.44 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.17 | MC |
| SRR7265377 | embryo | 1hA | 2.94 | MC |
| SRR7265376 | embryo | 1hA | 2.82 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.79 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.72 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.52 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.33 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.70 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.97 | MC |
| SRR6441554 | seedling | wild_type | 0.47 | MC |
| SRR6441555 | seedling | wild_type | 0.71 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.41 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.37 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.62 | MC |
| SRR1213695 | root | wt | 0.44 | MC |
| SRR1213694 | root | wt | 1.30 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.57 | MC |
| SRR1213693 | leaf | wt | 0.40 | MC |
| SRR1213692 | leaf | wt | 0.50 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.07 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.34 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 3.01 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.29 | MC |
| SRR4947489 | root | control | 4.70 | MC |
| SRR4947488 | root | control | 3.21 | MC |
| SRR4947481 | root | control | 5.31 | MC |
| SRR4947480 | root | control | 3.72 | MC |
| SRR4947483 | root | Al | 2.67 | MC |
| SRR4947482 | root | Al | 3.08 | MC |
| SRR4947485 | root | Al | 4.24 | MC |
| SRR4947484 | root | Al | 3.16 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.39 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.43 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.84 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.07 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.65 | MC |
| SRR6502096 | root | control | 4.06 | MC |
| SRR6502094 | root | control | 4.39 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.36 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.70 | MC |
| SRR7265393 | embryo | 12hN | 4.32 | MC |
| SRR7265392 | embryo | 12hN | 3.77 | MC |
| SRR7265391 | embryo | 12hN | 4.42 | MC |
| SRR7265390 | embryo | 12hA | 3.67 | MC |
| SRR5110460 | panicle | Dawn + 21h | 4.05 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.50 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.43 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.47 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.52 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.43 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.39 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.47 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.36 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.56 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.18 | MC |
| SRR3745127 | anther | wt | 4.45 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.23 | MC |
| SRR6168973 | leaf | none (control) | 3.43 | MC |
| SRR6168974 | leaf | none (control) | 2.83 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.23 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.98 | MC |
| SRR1740430 | root_meristematic_zone | wt | 3.34 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.81 | MC |
| SRR8060835 | leaf | wild_type | 0.45 | MC |
| SRR8060836 | leaf | wild_type | 0.71 | MC |
| SRR8060837 | leaf | wild_type | 0.21 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.37 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.53 | MC |
| SRR6502102 | leaf | control | 0.65 | MC |
| SRR5110429 | panicle | Dawn | 3.40 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.88 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.50 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.09 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.28 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.51 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.46 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.33 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.45 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.34 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.07 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.91 | MC |
| SRR6320498 | carpel | wt | 4.47 | MC |
| SRR5126149 | root | "mock,1_day" | 4.04 | MC |
| SRR5856938 | leaf | salt | 1.29 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.78 | MC |
| SRR7265414 | coleoptile | 4dA | 1.93 | MC |
| SRR7265415 | coleoptile | 4dN | 4.74 | MC |
| SRR7265412 | coleoptile | 4dA | 1.24 | MC |
| SRR7265413 | coleoptile | 4dA | 4.12 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.03 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.58 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.58 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.62 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.69 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.24 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.44 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.66 | MC |
| SRR5856934 | leaf | control | 1.91 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.00 | MC |