| SRR5560729 | caryopsis | wild_type | 0.36 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.13 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.69 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.32 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.55 | MC |
| SRR7265400 | coleoptile | 2dA | 0.52 | MC |
| SRR7265401 | coleoptile | 2dA | 0.34 | MC |
| SRR7265402 | coleoptile | 2dA | 0.34 | MC |
| SRR7265406 | coleoptile | 3dA | 0.68 | MC |
| SRR7265407 | coleoptile | 3dA | 0.27 | MC |
| SRR7265408 | coleoptile | 3dA | 0.38 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.93 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.53 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.68 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.42 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.77 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.22 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.53 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.19 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.84 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.37 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.32 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.30 | MC |
| SRR1213691 | flower | wt | 0.51 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.45 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.39 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.05 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.95 | MC |
| SRR5856927 | leaf | control | 0.28 | MC |
| SRR5856928 | leaf | control | 0.24 | MC |
| SRR5856933 | leaf | control | 0.71 | MC |
| SRR5856936 | leaf | salt | 0.15 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.47 | MC |
| SRR4947496 | root | control | 1.08 | MC |
| SRR1633182 | panicle | WT | 0.39 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.40 | MC |
| SRR5126147 | root | "mock,1_day" | 0.90 | MC |
| SRR5126148 | root | "mock,1_day" | 0.49 | MC |
| SRR5126149 | root | "mock,1_day" | 1.07 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.55 | MC |
| SRR5126153 | root | "mock,7_days" | 0.57 | MC |
| SRR5126155 | root | "mock,7_days" | 0.71 | MC |
| SRR5126157 | root | "mock,7_days" | 1.21 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.42 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.01 | MC |
| SRR5126165 | root | "mock,14_days" | 0.56 | MC |
| SRR5126167 | root | "mock,14_days" | 0.44 | MC |
| SRR5126169 | root | "mock,14_days" | 0.79 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.41 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.86 | MC |
| SRR4947480 | root | control | 0.80 | MC |
| SRR4947481 | root | control | 0.65 | MC |
| SRR4947484 | root | Al | 0.92 | MC |
| SRR4947485 | root | Al | 0.76 | MC |
| SRR4947488 | root | control | 1.03 | MC |
| SRR4947489 | root | control | 0.69 | MC |
| SRR4947492 | root | Al | 0.72 | MC |
| SRR4947493 | root | Al | 1.54 | MC |
| SRR4947497 | root | control | 0.95 | MC |
| SRR4947500 | root | Al | 1.38 | MC |
| SRR4947501 | root | Al | 2.01 | MC |
| SRR4947502 | root | control | 0.96 | MC |
| SRR4947504 | root | control | 0.71 | MC |
| SRR4947505 | root | control | 0.87 | MC |
| SRR4947508 | root | Al | 0.69 | MC |
| SRR4947509 | root | Al | 1.17 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.41 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.99 | MC |
| SRR6502094 | root | control | 0.75 | MC |
| SRR6502095 | root | control | 0.67 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.30 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.95 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.73 | MC |
| SRR6502106 | root | control | 0.46 | MC |
| SRR6502107 | root | control | 0.88 | MC |
| SRR6502108 | root | control | 0.67 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.39 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.49 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.66 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.92 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.68 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.89 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.60 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.11 | MC |
| SRR2154082 | seedling | wt | 0.55 | MC |
| SRR2154083 | seedling | wt | 1.27 | MC |
| SRR2154084 | seedling | wt | 0.73 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.62 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.49 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.78 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.12 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.25 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.53 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 6.65 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.83 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.13 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 4.98 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.52 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 6.14 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 7.45 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 5.00 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 7.53 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.54 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 6.35 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.37 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 6.71 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 8.34 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.71 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 7.04 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 7.42 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 7.41 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 6.12 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 6.59 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 7.45 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 7.48 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.80 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.93 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.09 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.35 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.41 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.71 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.89 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.47 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.55 | MC |