| SRR4457249 | 2nd_leaf | DAH4 | 3.72 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.29 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.17 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 3.81 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.96 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.31 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.21 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.30 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.85 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 4.26 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.47 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 3.27 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.64 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.30 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.68 | MC |
| SRR3745125 | anther | wt | 3.84 | MC |
| SRR3745127 | anther | wt | 5.06 | MC |
| SRR358795 | callus | wt | 4.55 | MC |
| SRR358796 | callus | wt | 6.27 | MC |
| SRR358797 | callus | wt | 4.18 | MC |
| SRR358798 | callus | wt | 3.59 | MC |
| SRR6320473 | carpel | wt | 2.60 | MC |
| SRR6320498 | carpel | wt | 4.55 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.52 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.00 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.14 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.84 | MC |
| SRR7265407 | coleoptile | 3dA | 3.05 | MC |
| SRR7265408 | coleoptile | 3dA | 1.86 | MC |
| SRR7265412 | coleoptile | 4dA | 2.27 | MC |
| SRR7265413 | coleoptile | 4dA | 3.91 | MC |
| SRR7265414 | coleoptile | 4dA | 1.98 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.42 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.21 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.50 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.64 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 3.22 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.93 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 3.11 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.26 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.00 | MC |
| SRR7265397 | embryo | 24hN | 5.04 | MC |
| SRR2338867 | endosprem | control | 1.56 | MC |
| SRR2338868 | endosprem | high_temperature | 1.55 | MC |
| SRR2338869 | endosprem | high_temperature | 2.70 | MC |
| SRR976168 | flag_leaf | wild_type | 1.71 | MC |
| SRR4457231 | flag_leaf | DAH4 | 3.12 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.42 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.72 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.11 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.48 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.81 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.01 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.42 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.92 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.36 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.09 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.38 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.07 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.20 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.83 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.64 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.87 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.19 | MC |
| SRR8240825 | leaf | wild_type | 2.11 | MC |
| SRR8240826 | leaf | wild_type | 2.15 | MC |
| SRR8240820 | leaf | wild_type | 1.08 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.22 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.69 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.49 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.69 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.17 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.60 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.00 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.32 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.63 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.55 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.73 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.95 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.89 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.65 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.23 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.20 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.53 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.71 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.65 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.13 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.82 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.20 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.31 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.08 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.43 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.54 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.92 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.48 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.50 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.15 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.91 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.02 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.59 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.45 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.93 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.00 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.93 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.63 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.16 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 5.53 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.88 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.05 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.88 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.05 | MC |
| SRR1761528 | leaf | drought | 5.53 | MC |
| SRR1761530 | leaf | control | 4.88 | MC |
| SRR1761531 | leaf | control | 4.05 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.36 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.72 | MC |
| SRR6417967 | leaf | H2O_control | 1.25 | MC |
| SRR6417968 | leaf | H2O_control | 1.92 | MC |
| SRR6417969 | leaf | H2O_control | 2.16 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.99 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.66 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.28 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.15 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.84 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.25 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.47 | MC |
| SRR8611901 | leaf | Non-inoculated | 3.29 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.43 | MC |
| SRR1213692 | leaf | wt | 2.44 | MC |
| SRR6502088 | leaf | control | 3.85 | MC |
| SRR6502089 | leaf | control | 2.56 | MC |
| SRR6502090 | leaf | control | 3.49 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.34 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.65 | MC |
| SRR6502100 | leaf | control | 2.79 | MC |
| SRR6502101 | leaf | control | 1.61 | MC |
| SRR6502102 | leaf | control | 3.18 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 7.02 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 4.93 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.76 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.61 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 4.49 | MC |
| SRR6168979 | leaf | none (control) | 1.85 | MC |
| SRR6168981 | leaf | none (control) | 2.08 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.71 | MC |
| SRR8582888 | panicle | AM | 2.41 | MC |
| SRR8582889 | panicle | AM | 1.37 | MC |
| SRR8582891 | panicle | PM | 5.05 | MC |
| SRR8582892 | panicle | PM | 4.26 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 4.52 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.34 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.84 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.71 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.51 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.80 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.30 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.90 | MC |
| SRR5126165 | root | "mock,14_days" | 4.72 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.02 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.03 | MC |
| SRR1213694 | root | wt | 2.07 | MC |
| SRR1213695 | root | wt | 3.07 | MC |
| SRR4947481 | root | control | 3.99 | MC |
| SRR4947482 | root | Al | 2.55 | MC |
| SRR4947497 | root | control | 5.19 | MC |
| SRR4947500 | root | Al | 4.76 | MC |
| SRR4947502 | root | control | 5.12 | MC |
| SRR4947505 | root | control | 5.11 | MC |
| SRR4947506 | root | Al | 4.04 | MC |
| SRR4947508 | root | Al | 4.29 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.66 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.79 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.20 | MC |
| SRR6502095 | root | control | 3.21 | MC |
| SRR6502096 | root | control | 4.07 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.89 | MC |
| SRR6502107 | root | control | 3.61 | MC |
| SRR6441554 | seedling | wild_type | 2.87 | MC |
| SRR6441555 | seedling | wild_type | 1.71 | MC |
| SRR2154086 | seedling | wt | 4.13 | MC |
| SRR2154082 | seedling | wt | 3.14 | MC |
| SRR2154083 | seedling | wt | 2.51 | MC |
| SRR2154085 | seedling | wt | 4.21 | MC |
| SRR2154087 | seedling | wt | 3.55 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.67 | MC |
| SRR1944583 | seedling | no_treatment | 2.33 | MC |
| SRR358791 | seedling | wt | 2.27 | MC |
| SRR358792 | seedling | wt | 1.88 | MC |
| SRR358793 | seedling | wt | 1.87 | MC |
| SRR358794 | seedling | wt | 1.55 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.86 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.58 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.36 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.66 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.64 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.00 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.86 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.82 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.38 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.17 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.69 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.74 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.30 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.56 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.32 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.18 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.71 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.07 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.14 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.44 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.65 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.41 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.81 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 4.92 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.54 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 5.45 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.26 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 5.78 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.58 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.45 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.61 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.69 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 5.19 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 8.20 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.39 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.07 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.33 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 4.32 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.66 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.87 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.13 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 4.45 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 5.38 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.73 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.29 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 4.91 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.52 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.70 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 4.47 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 7.82 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.51 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.21 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.83 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 5.56 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.95 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.37 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.26 | MC |