| SRR3745125 | anther | wt | 1.27 | MC |
| SRR3745126 | anther | wt | 0.51 | MC |
| SRR3745127 | anther | wt | 0.79 | MC |
| SRR5560729 | caryopsis | wild_type | 0.52 | MC |
| SRR4947495 | root | control | 1.42 | MC |
| SRR7265400 | coleoptile | 2dA | 2.40 | MC |
| SRR7265401 | coleoptile | 2dA | 1.85 | MC |
| SRR7265402 | coleoptile | 2dA | 2.75 | MC |
| SRR7265403 | coleoptile | 2dN | 4.30 | MC |
| SRR7265405 | coleoptile | 2dN | 3.69 | MC |
| SRR7265406 | coleoptile | 3dA | 0.91 | MC |
| SRR7265407 | coleoptile | 3dA | 1.36 | MC |
| SRR7265408 | coleoptile | 3dA | 0.64 | MC |
| SRR7265413 | coleoptile | 4dA | 1.42 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.60 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.52 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.42 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.44 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.82 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.46 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.84 | MC |
| SRR7265376 | embryo | 1hA | 0.41 | MC |
| SRR7265377 | embryo | 1hA | 0.46 | MC |
| SRR7265378 | embryo | 1hA | 0.66 | MC |
| SRR7265379 | embryo | 1hN | 1.05 | MC |
| SRR7265380 | embryo | 1hN | 0.90 | MC |
| SRR7265381 | embryo | 1hN | 1.28 | MC |
| SRR7265382 | embryo | 3hA | 0.55 | MC |
| SRR7265384 | embryo | 3hA | 0.99 | MC |
| SRR7265385 | embryo | 3hN | 0.78 | MC |
| SRR7265386 | embryo | 3hN | 0.76 | MC |
| SRR7265387 | embryo | 3hN | 0.77 | MC |
| SRR7265388 | embryo | 12hA | 0.90 | MC |
| SRR7265389 | embryo | 12hA | 0.92 | MC |
| SRR7265390 | embryo | 12hA | 0.69 | MC |
| SRR7265391 | embryo | 12hN | 4.26 | MC |
| SRR7265392 | embryo | 12hN | 4.33 | MC |
| SRR7265393 | embryo | 12hN | 3.57 | MC |
| SRR7265394 | embryo | 24hA | 3.23 | MC |
| SRR7265395 | embryo | 24hA | 2.10 | MC |
| SRR7265396 | embryo | 24hA | 2.08 | MC |
| SRR7265397 | embryo | 24hN | 3.93 | MC |
| SRR7265398 | embryo | 24hN | 3.91 | MC |
| SRR7265399 | embryo | 24hN | 2.52 | MC |
| SRR2338868 | endosprem | high_temperature | 0.52 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.74 | MC |
| SRR1213691 | flower | wt | 2.24 | MC |
| SRR8240818 | leaf | wild_type | 0.45 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.77 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.68 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.76 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.53 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.47 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.51 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.44 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.51 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.44 | MC |
| SRR1761528 | leaf | drought | 0.51 | MC |
| SRR1761529 | leaf | drought | 0.44 | MC |
| SRR504365 | leaf | wt | 0.24 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.38 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.63 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.43 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.66 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.03 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.14 | MC |
| SRR6502088 | leaf | control | 2.33 | MC |
| SRR6502089 | leaf | control | 0.43 | MC |
| SRR6502090 | leaf | control | 0.60 | MC |
| SRR6502100 | leaf | control | 3.34 | MC |
| SRR6502101 | leaf | control | 2.23 | MC |
| SRR6502102 | leaf | control | 1.46 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.79 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 1.85 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.36 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.77 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.17 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.19 | MC |
| SRR8582888 | panicle | AM | 2.32 | MC |
| SRR8582889 | panicle | AM | 1.42 | MC |
| SRR5110429 | panicle | Dawn | 4.15 | MC |
| SRR5110430 | panicle | Dawn | 4.82 | MC |
| SRR5110432 | panicle | Dawn | 0.69 | MC |
| SRR4947496 | root | control | 2.75 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.96 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.44 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.55 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.53 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.19 | MC |
| SRR5110439 | panicle | Dawn + 7h | 5.03 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.37 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.46 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.81 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.69 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.53 | MC |
| SRR5110446 | panicle | Dusk | 3.86 | MC |
| SRR5110447 | panicle | Dusk | 3.45 | MC |
| SRR5110448 | panicle | Dusk | 1.94 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.59 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.68 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.44 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.27 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.17 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.76 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.87 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.09 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.68 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.41 | MC |
| SRR5126147 | root | "mock,1_day" | 1.01 | MC |
| SRR5126148 | root | "mock,1_day" | 0.86 | MC |
| SRR5126149 | root | "mock,1_day" | 1.09 | MC |
| SRR5126153 | root | "mock,7_days" | 1.37 | MC |
| SRR5126165 | root | "mock,14_days" | 0.84 | MC |
| SRR5126167 | root | "mock,14_days" | 1.56 | MC |
| SRR5126169 | root | "mock,14_days" | 4.51 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.38 | MC |
| SRR4947478 | root | control | 1.14 | MC |
| SRR4947479 | root | control | 0.88 | MC |
| SRR4947480 | root | control | 4.19 | MC |
| SRR4947482 | root | Al | 1.05 | MC |
| SRR4947483 | root | Al | 0.62 | MC |
| SRR4947484 | root | Al | 1.26 | MC |
| SRR4947487 | root | control | 1.24 | MC |
| SRR4947488 | root | control | 3.41 | MC |
| SRR4947490 | root | Al | 2.54 | MC |
| SRR4947491 | root | Al | 2.91 | MC |
| SRR4947492 | root | Al | 2.98 | MC |
| SRR4947494 | root | control | 1.51 | MC |
| SRR4947498 | root | Al | 1.57 | MC |
| SRR4947499 | root | Al | 1.63 | MC |
| SRR4947500 | root | Al | 2.16 | MC |
| SRR4947501 | root | Al | 6.03 | MC |
| SRR4947502 | root | control | 3.08 | MC |
| SRR4947503 | root | control | 1.33 | MC |
| SRR4947504 | root | control | 4.75 | MC |
| SRR4947506 | root | Al | 1.07 | MC |
| SRR4947507 | root | Al | 2.13 | MC |
| SRR4947509 | root | Al | 4.61 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.72 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.58 | MC |
| SRR6502096 | root | control | 4.43 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.80 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.93 | MC |
| SRR6502108 | root | control | 2.27 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.34 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.39 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.34 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.79 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.27 | MC |
| SRR6441554 | seedling | wild_type | 0.34 | MC |
| SRR6441555 | seedling | wild_type | 0.30 | MC |
| SRR2154086 | seedling | wt | 1.96 | MC |
| SRR2154082 | seedling | wt | 0.70 | MC |
| SRR2154087 | seedling | wt | 2.00 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.68 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.96 | MC |
| SRR358791 | seedling | wt | 4.16 | MC |
| SRR358792 | seedling | wt | 4.18 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.22 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.97 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.23 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.83 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.56 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.14 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.34 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.94 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.45 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.61 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.89 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.56 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.47 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.38 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.77 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.83 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.52 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.69 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.87 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.72 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.67 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.71 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.37 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.76 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.83 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.54 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.82 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.60 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.27 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.28 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.46 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.28 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.32 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.86 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.44 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.99 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 3.32 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.99 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.55 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.09 | MC |