| SRR4457250 | 2nd_leaf | DAH4 | 1.50 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.38 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.96 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.47 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.22 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.90 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.02 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.46 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.77 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.88 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.23 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.71 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.61 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.28 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.99 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.72 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.21 | MC |
| SRR3745125 | anther | wt | 1.29 | MC |
| SRR3745126 | anther | wt | 1.84 | MC |
| SRR5560727 | caryopsis | wild_type | 5.05 | MC |
| SRR5560728 | caryopsis | wild_type | 4.49 | MC |
| SRR5560729 | caryopsis | wild_type | 3.37 | MC |
| SRR7265401 | coleoptile | 2dA | 0.40 | MC |
| SRR7265411 | coleoptile | 3dN | 0.51 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.48 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.73 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.90 | MC |
| SRR7265387 | embryo | 3hN | 0.33 | MC |
| SRR2338868 | endosprem | high_temperature | 0.65 | MC |
| SRR2338869 | endosprem | high_temperature | 1.80 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.36 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.02 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.65 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.62 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.70 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.04 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.61 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.80 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.33 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.10 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.83 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.33 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.44 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.61 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.51 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.85 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.33 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.22 | MC |
| SRR1213691 | flower | wt | 1.47 | MC |
| SRR8060835 | leaf | wild_type | 1.98 | MC |
| SRR8060836 | leaf | wild_type | 2.95 | MC |
| SRR8240825 | leaf | wild_type | 1.99 | MC |
| SRR8240826 | leaf | wild_type | 1.97 | MC |
| SRR8240818 | leaf | wild_type | 0.34 | MC |
| SRR8240819 | leaf | wild_type | 0.86 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.89 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.26 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.37 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.76 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.05 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.99 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.28 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.55 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.58 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.25 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.66 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.14 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.32 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.32 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.63 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.88 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.36 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.89 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.02 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.18 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.86 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.70 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.01 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.52 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.91 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.23 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.71 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.51 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.53 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.99 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.18 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.90 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.54 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.24 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.35 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 4.13 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.15 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 4.13 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.15 | MC |
| SRR1761529 | leaf | drought | 4.13 | MC |
| SRR1761530 | leaf | control | 2.15 | MC |
| SRR504365 | leaf | wt | 2.12 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.45 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.93 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.94 | MC |
| SRR6417967 | leaf | H2O_control | 3.05 | MC |
| SRR6417968 | leaf | H2O_control | 2.32 | MC |
| SRR6417969 | leaf | H2O_control | 2.72 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.29 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.90 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.53 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.62 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.15 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.52 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.13 | MC |
| SRR1213692 | leaf | wt | 1.57 | MC |
| SRR1213693 | leaf | wt | 2.27 | MC |
| SRR6168973 | leaf | none (control) | 1.24 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.42 | MC |
| SRR6168979 | leaf | none (control) | 0.37 | MC |
| SRR6168980 | leaf | none (control) | 0.44 | MC |
| SRR6168981 | leaf | none (control) | 1.81 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.57 | MC |
| SRR8582888 | panicle | AM | 2.00 | MC |
| SRR8582890 | panicle | AM | 2.52 | MC |
| SRR8582891 | panicle | PM | 2.77 | MC |
| SRR8582892 | panicle | PM | 1.73 | MC |
| SRR8582893 | panicle | PM | 3.98 | MC |
| SRR4947496 | root | control | 3.81 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.30 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.26 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.31 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.47 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.96 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.53 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.99 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.78 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.66 | MC |
| SRR5126153 | root | "mock,7_days" | 3.05 | MC |
| SRR5126155 | root | "mock,7_days" | 4.14 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.28 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.20 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.91 | MC |
| SRR5126165 | root | "mock,14_days" | 3.26 | MC |
| SRR5126167 | root | "mock,14_days" | 2.47 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.26 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.74 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.77 | MC |
| SRR1213694 | root | wt | 0.63 | MC |
| SRR1213695 | root | wt | 1.09 | MC |
| SRR4947480 | root | control | 4.98 | MC |
| SRR4947481 | root | control | 5.67 | MC |
| SRR4947484 | root | Al | 4.19 | MC |
| SRR4947485 | root | Al | 3.65 | MC |
| SRR4947492 | root | Al | 5.61 | MC |
| SRR4947493 | root | Al | 2.30 | MC |
| SRR4947497 | root | control | 4.26 | MC |
| SRR4947501 | root | Al | 2.41 | MC |
| SRR4947505 | root | control | 3.82 | MC |
| SRR4947508 | root | Al | 2.32 | MC |
| SRR4947509 | root | Al | 2.72 | MC |
| SRR6502094 | root | control | 0.41 | MC |
| SRR6502095 | root | control | 0.40 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.66 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.22 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.64 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.70 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.28 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.74 | MC |
| SRR6441555 | seedling | wild_type | 2.25 | MC |
| SRR2154086 | seedling | wt | 3.41 | MC |
| SRR2154085 | seedling | wt | 2.93 | MC |
| SRR2154087 | seedling | wt | 2.48 | MC |
| SRR3098741 | seedling | wt | 1.11 | MC |
| SRR3098742 | seedling | wt | 2.49 | MC |
| SRR3098743 | seedling | wt | 2.43 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.15 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.40 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.29 | MC |
| SRR358793 | seedling | wt | 5.26 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.08 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.35 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.07 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.06 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.03 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.30 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.96 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.53 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.30 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.32 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.48 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.90 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.07 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.65 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.60 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.71 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.65 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.02 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.72 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 6.45 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.95 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 6.07 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.21 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.71 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.12 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 5.10 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.79 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.75 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.81 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 4.26 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.01 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.17 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 5.81 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.48 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 4.35 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 6.11 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.38 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 5.72 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.90 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.43 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 5.49 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 7.09 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.17 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.60 | MC |