| SRR358795 | callus | wt | 7.71 | MC |
| SRR358796 | callus | wt | 6.68 | MC |
| SRR358797 | callus | wt | 5.09 | MC |
| SRR358798 | callus | wt | 4.57 | MC |
| SRR6320473 | carpel | wt | 3.42 | MC |
| SRR6320498 | carpel | wt | 6.29 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.07 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.26 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.14 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.37 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.82 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.51 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.37 | MC |
| SRR7265376 | embryo | 1hA | 1.68 | MC |
| SRR7265377 | embryo | 1hA | 2.25 | MC |
| SRR7265378 | embryo | 1hA | 1.67 | MC |
| SRR7265379 | embryo | 1hN | 0.37 | MC |
| SRR7265380 | embryo | 1hN | 0.94 | MC |
| SRR7265381 | embryo | 1hN | 0.65 | MC |
| SRR7265388 | embryo | 12hA | 0.85 | MC |
| SRR7265389 | embryo | 12hA | 1.73 | MC |
| SRR7265390 | embryo | 12hA | 1.32 | MC |
| SRR7265391 | embryo | 12hN | 2.77 | MC |
| SRR7265392 | embryo | 12hN | 1.60 | MC |
| SRR7265393 | embryo | 12hN | 2.25 | MC |
| SRR7265395 | embryo | 24hA | 0.52 | MC |
| SRR7265398 | embryo | 24hN | 0.46 | MC |
| SRR2338867 | endosprem | control | 0.38 | MC |
| SRR2338868 | endosprem | high_temperature | 0.48 | MC |
| SRR976168 | flag_leaf | wild_type | 1.22 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.97 | MC |
| SRR8240824 | leaf | wild_type | 0.39 | MC |
| SRR8240820 | leaf | wild_type | 0.25 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.82 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.25 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.67 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.64 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.98 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.34 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.33 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.20 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.90 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.72 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.29 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.51 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.27 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.74 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.94 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.54 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.90 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.99 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.65 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.12 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.76 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.89 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.28 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.69 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.77 | MC |
| SRR6417967 | leaf | H2O_control | 0.85 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.60 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.33 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.79 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.66 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.07 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.08 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.24 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.42 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.35 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.25 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.66 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.24 | MC |
| SRR6502089 | leaf | control | 0.33 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.93 | MC |
| SRR5856927 | leaf | control | 0.65 | MC |
| SRR5856928 | leaf | control | 0.42 | MC |
| SRR5856929 | leaf | control | 0.19 | MC |
| SRR5856930 | leaf | salt | 0.67 | MC |
| SRR5856931 | leaf | salt | 1.06 | MC |
| SRR5856932 | leaf | salt | 1.82 | MC |
| SRR5856934 | leaf | control | 0.22 | MC |
| SRR5856935 | leaf | control | 0.30 | MC |
| SRR5856936 | leaf | salt | 0.75 | MC |
| SRR5856937 | leaf | salt | 1.08 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 3.48 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 4.19 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.97 | MC |
| SRR6168973 | leaf | none (control) | 2.55 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.83 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.37 | MC |
| SRR8582893 | panicle | PM | 0.30 | MC |
| SRR5110429 | panicle | Dawn | 0.49 | MC |
| SRR5110431 | panicle | Dawn | 0.41 | MC |
| SRR4947496 | root | control | 1.06 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.18 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.70 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.47 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.02 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.61 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.16 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.64 | MC |
| SRR5110445 | panicle | Dusk | 2.02 | MC |
| SRR5110446 | panicle | Dusk | 0.68 | MC |
| SRR5110447 | panicle | Dusk | 0.93 | MC |
| SRR5110448 | panicle | Dusk | 1.46 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.58 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.93 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.75 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.57 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.43 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.58 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.38 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.60 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.79 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.50 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.62 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.79 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.61 | MC |
| SRR5126147 | root | "mock,1_day" | 1.86 | MC |
| SRR5126148 | root | "mock,1_day" | 1.96 | MC |
| SRR5126149 | root | "mock,1_day" | 0.57 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.59 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.60 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.42 | MC |
| SRR5126155 | root | "mock,7_days" | 0.87 | MC |
| SRR5126157 | root | "mock,7_days" | 1.26 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.04 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.67 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.44 | MC |
| SRR5126165 | root | "mock,14_days" | 1.34 | MC |
| SRR5126167 | root | "mock,14_days" | 1.19 | MC |
| SRR5126169 | root | "mock,14_days" | 0.37 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.41 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.56 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.70 | MC |
| SRR1213695 | root | wt | 0.14 | MC |
| SRR4947479 | root | control | 0.52 | MC |
| SRR4947480 | root | control | 1.18 | MC |
| SRR4947481 | root | control | 1.45 | MC |
| SRR4947482 | root | Al | 0.39 | MC |
| SRR4947484 | root | Al | 1.16 | MC |
| SRR4947485 | root | Al | 1.05 | MC |
| SRR4947488 | root | control | 0.67 | MC |
| SRR4947489 | root | control | 1.28 | MC |
| SRR4947490 | root | Al | 0.84 | MC |
| SRR4947492 | root | Al | 1.31 | MC |
| SRR4947493 | root | Al | 0.80 | MC |
| SRR4947494 | root | control | 0.52 | MC |
| SRR4947498 | root | Al | 0.63 | MC |
| SRR4947500 | root | Al | 0.68 | MC |
| SRR4947503 | root | control | 0.53 | MC |
| SRR4947504 | root | control | 1.16 | MC |
| SRR4947505 | root | control | 1.02 | MC |
| SRR4947506 | root | Al | 0.89 | MC |
| SRR4947508 | root | Al | 0.72 | MC |
| SRR4947509 | root | Al | 1.32 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.88 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.72 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.90 | MC |
| SRR6502094 | root | control | 0.61 | MC |
| SRR6502095 | root | control | 1.19 | MC |
| SRR6502096 | root | control | 1.22 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.68 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.20 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.84 | MC |
| SRR6502106 | root | control | 0.53 | MC |
| SRR6502107 | root | control | 0.79 | MC |
| SRR6502108 | root | control | 0.79 | MC |
| SRR2154086 | seedling | wt | 0.52 | MC |
| SRR2154083 | seedling | wt | 0.60 | MC |
| SRR2154084 | seedling | wt | 0.50 | MC |
| SRR2154085 | seedling | wt | 0.69 | MC |
| SRR2154087 | seedling | wt | 1.91 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.77 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.76 | MC |
| SRR358791 | seedling | wt | 0.77 | MC |
| SRR358792 | seedling | wt | 1.36 | MC |
| SRR358793 | seedling | wt | 0.82 | MC |
| SRR358794 | seedling | wt | 0.75 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.76 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.24 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.35 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.05 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.09 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.27 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.54 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.34 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.68 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.28 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.20 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.41 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.49 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.32 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.76 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.64 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.14 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.06 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.57 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.28 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.95 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.15 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.19 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.17 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.33 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.89 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.25 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.28 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.48 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.83 | MC |