| SRR3745125 | anther | wt | 1.50 | MC |
| SRR3745126 | anther | wt | 1.95 | MC |
| SRR3745127 | anther | wt | 1.97 | MC |
| SRR358797 | callus | wt | 9.11 | MC |
| SRR358798 | callus | wt | 7.55 | MC |
| SRR5560727 | caryopsis | wild_type | 1.78 | MC |
| SRR5560728 | caryopsis | wild_type | 1.87 | MC |
| SRR5560729 | caryopsis | wild_type | 1.19 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.96 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.53 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.72 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.39 | MC |
| SRR7265400 | coleoptile | 2dA | 2.48 | MC |
| SRR7265401 | coleoptile | 2dA | 2.39 | MC |
| SRR7265402 | coleoptile | 2dA | 2.85 | MC |
| SRR7265403 | coleoptile | 2dN | 2.12 | MC |
| SRR7265404 | coleoptile | 2dN | 1.95 | MC |
| SRR7265405 | coleoptile | 2dN | 2.09 | MC |
| SRR7265406 | coleoptile | 3dA | 2.17 | MC |
| SRR7265407 | coleoptile | 3dA | 2.24 | MC |
| SRR7265408 | coleoptile | 3dA | 1.32 | MC |
| SRR7265409 | coleoptile | 3dN | 2.80 | MC |
| SRR7265410 | coleoptile | 3dN | 3.23 | MC |
| SRR7265411 | coleoptile | 3dN | 3.10 | MC |
| SRR7265412 | coleoptile | 4dA | 0.60 | MC |
| SRR7265413 | coleoptile | 4dA | 2.72 | MC |
| SRR7265414 | coleoptile | 4dA | 2.68 | MC |
| SRR7265415 | coleoptile | 4dN | 2.39 | MC |
| SRR7265416 | coleoptile | 4dN | 2.01 | MC |
| SRR7265417 | coleoptile | 4dN | 2.39 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.84 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.70 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.90 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.73 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.72 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.89 | MC |
| SRR7265382 | embryo | 3hA | 2.00 | MC |
| SRR7265383 | embryo | 3hA | 3.30 | MC |
| SRR7265384 | embryo | 3hA | 2.76 | MC |
| SRR7265388 | embryo | 12hA | 2.14 | MC |
| SRR7265389 | embryo | 12hA | 1.79 | MC |
| SRR7265390 | embryo | 12hA | 2.53 | MC |
| SRR7265391 | embryo | 12hN | 4.18 | MC |
| SRR7265392 | embryo | 12hN | 3.20 | MC |
| SRR7265393 | embryo | 12hN | 3.92 | MC |
| SRR7265394 | embryo | 24hA | 1.69 | MC |
| SRR7265395 | embryo | 24hA | 1.68 | MC |
| SRR7265396 | embryo | 24hA | 2.78 | MC |
| SRR7265397 | embryo | 24hN | 2.27 | MC |
| SRR7265398 | embryo | 24hN | 2.42 | MC |
| SRR7265399 | embryo | 24hN | 2.79 | MC |
| SRR976168 | flag_leaf | wild_type | 2.99 | MC |
| SRR4457240 | flag_leaf | DAH28 | 4.91 | MC |
| SRR8240824 | leaf | wild_type | 0.53 | MC |
| SRR8240825 | leaf | wild_type | 0.48 | MC |
| SRR8240826 | leaf | wild_type | 0.30 | MC |
| SRR8240818 | leaf | wild_type | 0.39 | MC |
| SRR8240819 | leaf | wild_type | 0.40 | MC |
| SRR8240820 | leaf | wild_type | 0.63 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.25 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.04 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.39 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.21 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.54 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.10 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.33 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.03 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.93 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 5.26 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 5.26 | MC |
| SRR1761528 | leaf | drought | 5.26 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.90 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.74 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.74 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.03 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.81 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.08 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.18 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.11 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.37 | MC |
| SRR6168979 | leaf | none (control) | 0.21 | MC |
| SRR6168980 | leaf | none (control) | 0.93 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.62 | MC |
| SRR4947496 | root | control | 4.76 | MC |
| SRR5126147 | root | "mock,1_day" | 0.54 | MC |
| SRR5126148 | root | "mock,1_day" | 0.51 | MC |
| SRR5126149 | root | "mock,1_day" | 1.18 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.01 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.15 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.70 | MC |
| SRR5126153 | root | "mock,7_days" | 3.62 | MC |
| SRR5126155 | root | "mock,7_days" | 3.03 | MC |
| SRR5126157 | root | "mock,7_days" | 3.98 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.39 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.37 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.98 | MC |
| SRR5126165 | root | "mock,14_days" | 2.02 | MC |
| SRR5126167 | root | "mock,14_days" | 2.65 | MC |
| SRR5126169 | root | "mock,14_days" | 3.75 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.19 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.12 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.61 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.54 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.02 | MC |
| SRR4947480 | root | control | 3.16 | MC |
| SRR4947481 | root | control | 4.45 | MC |
| SRR4947484 | root | Al | 4.18 | MC |
| SRR4947488 | root | control | 4.38 | MC |
| SRR4947489 | root | control | 3.77 | MC |
| SRR4947492 | root | Al | 4.15 | MC |
| SRR4947493 | root | Al | 3.50 | MC |
| SRR4947500 | root | Al | 3.38 | MC |
| SRR4947501 | root | Al | 6.06 | MC |
| SRR4947504 | root | control | 4.03 | MC |
| SRR4947505 | root | control | 4.74 | MC |
| SRR4947508 | root | Al | 2.79 | MC |
| SRR4947509 | root | Al | 3.60 | MC |
| SRR6502103 | root | 100 mM NaCl | 5.37 | MC |
| SRR6502108 | root | control | 3.95 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.97 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.02 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.09 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.53 | MC |
| SRR6441554 | seedling | wild_type | 1.58 | MC |
| SRR6441555 | seedling | wild_type | 2.09 | MC |
| SRR3098741 | seedling | wt | 2.11 | MC |
| SRR3098742 | seedling | wt | 1.91 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.07 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.97 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.07 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.78 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.97 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.24 | MC |