| SRR4457249 | 2nd_leaf | DAH4 | 2.42 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.98 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.17 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.82 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.63 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.76 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.81 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.04 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.51 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.38 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.99 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.55 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.10 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.57 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 3.40 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.47 | MC |
| SRR3745125 | anther | wt | 0.57 | MC |
| SRR3745126 | anther | wt | 0.53 | MC |
| SRR6320473 | carpel | wt | 3.17 | MC |
| SRR6320498 | carpel | wt | 1.88 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.44 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.25 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.73 | MC |
| SRR7265401 | coleoptile | 2dA | 0.37 | MC |
| SRR7265402 | coleoptile | 2dA | 0.37 | MC |
| SRR7265403 | coleoptile | 2dN | 0.52 | MC |
| SRR7265404 | coleoptile | 2dN | 0.50 | MC |
| SRR7265406 | coleoptile | 3dA | 0.63 | MC |
| SRR7265407 | coleoptile | 3dA | 0.34 | MC |
| SRR7265413 | coleoptile | 4dA | 0.55 | MC |
| SRR7265414 | coleoptile | 4dA | 0.78 | MC |
| SRR7265415 | coleoptile | 4dN | 0.55 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.44 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.62 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.65 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.68 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.39 | MC |
| SRR7265394 | embryo | 24hA | 0.63 | MC |
| SRR7265395 | embryo | 24hA | 0.80 | MC |
| SRR7265396 | embryo | 24hA | 1.18 | MC |
| SRR7265397 | embryo | 24hN | 0.89 | MC |
| SRR7265398 | embryo | 24hN | 0.86 | MC |
| SRR7265399 | embryo | 24hN | 1.29 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.68 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.57 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.91 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.58 | MC |
| SRR4457235 | flag_leaf | DAH12 | 3.34 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.45 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.97 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.53 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.03 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.48 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.64 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.45 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.14 | MC |
| SRR8060835 | leaf | wild_type | 1.21 | MC |
| SRR8060836 | leaf | wild_type | 1.92 | MC |
| SRR8060837 | leaf | wild_type | 0.83 | MC |
| SRR8240826 | leaf | wild_type | 1.97 | MC |
| SRR8240818 | leaf | wild_type | 1.49 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.42 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.98 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.52 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.25 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.73 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.77 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.56 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.53 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.62 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.47 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.32 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.83 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.58 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.32 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.10 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.24 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.45 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.21 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.18 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.91 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.66 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.95 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.52 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.34 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.61 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.10 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.30 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.15 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.59 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.12 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.95 | MC |
| SRR504365 | leaf | wt | 0.43 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.46 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.06 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.56 | MC |
| SRR6417967 | leaf | H2O_control | 2.24 | MC |
| SRR6417968 | leaf | H2O_control | 2.55 | MC |
| SRR6417969 | leaf | H2O_control | 3.24 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.50 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.90 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.50 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.26 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.28 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.32 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.15 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.62 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.17 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.43 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.91 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.95 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.41 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.24 | MC |
| SRR1213692 | leaf | wt | 0.39 | MC |
| SRR1213693 | leaf | wt | 1.76 | MC |
| SRR6502088 | leaf | control | 3.75 | MC |
| SRR6502090 | leaf | control | 3.75 | MC |
| SRR5856927 | leaf | control | 0.21 | MC |
| SRR5856929 | leaf | control | 0.27 | MC |
| SRR5856930 | leaf | salt | 0.49 | MC |
| SRR5856933 | leaf | control | 2.43 | MC |
| SRR5856934 | leaf | control | 1.09 | MC |
| SRR5856935 | leaf | control | 0.40 | MC |
| SRR5856938 | leaf | salt | 1.19 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.37 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.21 | MC |
| SRR6168973 | leaf | none (control) | 0.65 | MC |
| SRR6168974 | leaf | none (control) | 2.21 | MC |
| SRR6168975 | leaf | none (control) | 3.34 | MC |
| SRR8582891 | panicle | PM | 0.66 | MC |
| SRR8582892 | panicle | PM | 1.43 | MC |
| SRR8582893 | panicle | PM | 2.84 | MC |
| SRR1633182 | panicle | WT | 0.75 | MC |
| SRR1633185 | panicle | WT | 0.92 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.44 | MC |
| SRR5126148 | root | "mock,1_day" | 2.31 | MC |
| SRR5126149 | root | "mock,1_day" | 1.48 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.00 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.02 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.89 | MC |
| SRR5126153 | root | "mock,7_days" | 0.44 | MC |
| SRR5126155 | root | "mock,7_days" | 1.06 | MC |
| SRR5126157 | root | "mock,7_days" | 2.65 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.52 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.43 | MC |
| SRR5126169 | root | "mock,14_days" | 2.88 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.53 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.62 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.82 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.37 | MC |
| SRR1213694 | root | wt | 0.60 | MC |
| SRR1213695 | root | wt | 1.12 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.97 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.83 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.31 | MC |
| SRR6502094 | root | control | 0.41 | MC |
| SRR6502095 | root | control | 0.43 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.66 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.74 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.90 | MC |
| SRR6502106 | root | control | 0.41 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.97 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.28 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.47 | MC |
| SRR6441554 | seedling | wild_type | 0.33 | MC |
| SRR6441555 | seedling | wild_type | 0.33 | MC |
| SRR2154086 | seedling | wt | 1.35 | MC |
| SRR2154085 | seedling | wt | 0.62 | MC |
| SRR2154087 | seedling | wt | 1.33 | MC |
| SRR3098741 | seedling | wt | 1.44 | MC |
| SRR3098742 | seedling | wt | 1.70 | MC |
| SRR3098743 | seedling | wt | 1.29 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.87 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.05 | MC |
| SRR1944583 | seedling | no_treatment | 0.85 | MC |
| SRR358791 | seedling | wt | 1.18 | MC |
| SRR358792 | seedling | wt | 1.50 | MC |
| SRR358793 | seedling | wt | 3.45 | MC |
| SRR358794 | seedling | wt | 3.04 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.78 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.74 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.44 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.26 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.26 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.15 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.98 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.32 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.13 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.59 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.81 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.05 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.89 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.43 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.57 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.92 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.37 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.59 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.70 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.69 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.93 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.44 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.06 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.48 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.21 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.93 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.46 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.66 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 0.89 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.60 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.51 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.61 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.05 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.84 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.53 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.58 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.07 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.61 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.85 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.84 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.76 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.96 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.77 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.93 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.84 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.25 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.76 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.53 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.55 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.87 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.34 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.61 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.66 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.68 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.48 | MC |