| SRR4457254 | 2nd_leaf | DAH12 | 0.25 | MC |
| SRR3745125 | anther | wt | 1.32 | MC |
| SRR3745126 | anther | wt | 1.65 | MC |
| SRR3745127 | anther | wt | 1.31 | MC |
| SRR6320473 | carpel | wt | 1.94 | MC |
| SRR6320498 | carpel | wt | 1.16 | MC |
| SRR5560727 | caryopsis | wild_type | 0.89 | MC |
| SRR5560728 | caryopsis | wild_type | 2.26 | MC |
| SRR5560729 | caryopsis | wild_type | 1.38 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.80 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.73 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.17 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.42 | MC |
| SRR7265400 | coleoptile | 2dA | 1.55 | MC |
| SRR7265401 | coleoptile | 2dA | 1.17 | MC |
| SRR7265402 | coleoptile | 2dA | 1.18 | MC |
| SRR7265403 | coleoptile | 2dN | 2.88 | MC |
| SRR7265406 | coleoptile | 3dA | 0.56 | MC |
| SRR7265407 | coleoptile | 3dA | 0.33 | MC |
| SRR7265409 | coleoptile | 3dN | 1.01 | MC |
| SRR7265410 | coleoptile | 3dN | 1.18 | MC |
| SRR7265411 | coleoptile | 3dN | 0.95 | MC |
| SRR7265413 | coleoptile | 4dA | 1.11 | MC |
| SRR7265414 | coleoptile | 4dA | 0.80 | MC |
| SRR7265416 | coleoptile | 4dN | 1.21 | MC |
| SRR7265417 | coleoptile | 4dN | 0.86 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.99 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.17 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.93 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.94 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.42 | MC |
| SRR7265374 | embryo | dry seed 0 h | 4.05 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.12 | MC |
| SRR7265395 | embryo | 24hA | 2.70 | MC |
| SRR7265396 | embryo | 24hA | 2.01 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.68 | MC |
| SRR8060835 | leaf | wild_type | 0.39 | MC |
| SRR8060836 | leaf | wild_type | 0.68 | MC |
| SRR8240824 | leaf | wild_type | 0.62 | MC |
| SRR8240825 | leaf | wild_type | 0.46 | MC |
| SRR8240826 | leaf | wild_type | 0.40 | MC |
| SRR8240818 | leaf | wild_type | 0.27 | MC |
| SRR8240819 | leaf | wild_type | 1.16 | MC |
| SRR8240820 | leaf | wild_type | 1.25 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.16 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.27 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.05 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.35 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.37 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.03 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.25 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.93 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.26 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.36 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.84 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.50 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.78 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.50 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.78 | MC |
| SRR1761530 | leaf | control | 0.48 | MC |
| SRR1761531 | leaf | control | 0.78 | MC |
| SRR504365 | leaf | wt | 0.34 | MC |
| SRR6417967 | leaf | H2O_control | 3.10 | MC |
| SRR6417968 | leaf | H2O_control | 2.11 | MC |
| SRR6417969 | leaf | H2O_control | 1.66 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.31 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.52 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.23 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.69 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.39 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.90 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.01 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.73 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.57 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.71 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.31 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.16 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.23 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.43 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.55 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.57 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.32 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.10 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.91 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.91 | MC |
| SRR1213692 | leaf | wt | 1.12 | MC |
| SRR1213693 | leaf | wt | 0.83 | MC |
| SRR6502088 | leaf | control | 1.40 | MC |
| SRR6502089 | leaf | control | 1.15 | MC |
| SRR6502090 | leaf | control | 1.21 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.59 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.74 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.14 | MC |
| SRR6502100 | leaf | control | 0.33 | MC |
| SRR6502101 | leaf | control | 0.47 | MC |
| SRR6502102 | leaf | control | 0.54 | MC |
| SRR5856927 | leaf | control | 1.02 | MC |
| SRR5856928 | leaf | control | 0.82 | MC |
| SRR5856929 | leaf | control | 0.53 | MC |
| SRR5856930 | leaf | salt | 0.93 | MC |
| SRR5856931 | leaf | salt | 0.80 | MC |
| SRR5856932 | leaf | salt | 1.44 | MC |
| SRR5856933 | leaf | control | 0.99 | MC |
| SRR5856934 | leaf | control | 0.70 | MC |
| SRR5856935 | leaf | control | 0.39 | MC |
| SRR5856936 | leaf | salt | 1.15 | MC |
| SRR5856937 | leaf | salt | 1.33 | MC |
| SRR5856938 | leaf | salt | 1.49 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 2.27 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.23 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.68 | MC |
| SRR6168973 | leaf | none (control) | 3.95 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.80 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.37 | MC |
| SRR8582889 | panicle | AM | 0.17 | MC |
| SRR8582890 | panicle | AM | 0.21 | MC |
| SRR5110429 | panicle | Dawn | 0.49 | MC |
| SRR5110431 | panicle | Dawn | 0.44 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.38 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.83 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.61 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.66 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.97 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.87 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.84 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.70 | MC |
| SRR5110445 | panicle | Dusk | 1.18 | MC |
| SRR5110446 | panicle | Dusk | 0.51 | MC |
| SRR5110448 | panicle | Dusk | 1.01 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.55 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.52 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.50 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.49 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.44 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.15 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.97 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.81 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.92 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.53 | MC |
| SRR1213695 | root | wt | 0.28 | MC |
| SRR4947478 | root | control | 1.17 | MC |
| SRR4947479 | root | control | 0.45 | MC |
| SRR4947480 | root | control | 4.50 | MC |
| SRR4947482 | root | Al | 0.90 | MC |
| SRR4947483 | root | Al | 0.93 | MC |
| SRR4947484 | root | Al | 3.45 | MC |
| SRR4947485 | root | Al | 4.38 | MC |
| SRR4947487 | root | control | 0.69 | MC |
| SRR4947488 | root | control | 3.95 | MC |
| SRR4947489 | root | control | 3.34 | MC |
| SRR4947490 | root | Al | 1.27 | MC |
| SRR4947492 | root | Al | 4.55 | MC |
| SRR4947493 | root | Al | 3.19 | MC |
| SRR4947494 | root | control | 1.31 | MC |
| SRR4947497 | root | control | 3.78 | MC |
| SRR4947498 | root | Al | 1.60 | MC |
| SRR4947499 | root | Al | 0.81 | MC |
| SRR4947500 | root | Al | 3.93 | MC |
| SRR4947501 | root | Al | 3.69 | MC |
| SRR4947502 | root | control | 1.69 | MC |
| SRR4947503 | root | control | 0.64 | MC |
| SRR4947506 | root | Al | 1.81 | MC |
| SRR4947508 | root | Al | 4.93 | MC |
| SRR4947509 | root | Al | 5.27 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.96 | MC |
| SRR6502094 | root | control | 2.39 | MC |
| SRR6502095 | root | control | 2.66 | MC |
| SRR6502096 | root | control | 2.78 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.93 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.40 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.87 | MC |
| SRR6502106 | root | control | 0.85 | MC |
| SRR6502107 | root | control | 1.40 | MC |
| SRR6502108 | root | control | 2.95 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.53 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.27 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.80 | MC |
| SRR6441554 | seedling | wild_type | 0.74 | MC |
| SRR6441555 | seedling | wild_type | 1.06 | MC |
| SRR2154086 | seedling | wt | 2.67 | MC |
| SRR2154083 | seedling | wt | 1.18 | MC |
| SRR2154084 | seedling | wt | 1.18 | MC |
| SRR3098741 | seedling | wt | 1.76 | MC |
| SRR3098742 | seedling | wt | 0.44 | MC |
| SRR3098743 | seedling | wt | 0.35 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.74 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.14 | MC |
| SRR1944583 | seedling | no_treatment | 0.46 | MC |
| SRR358791 | seedling | wt | 1.14 | MC |
| SRR358792 | seedling | wt | 1.37 | MC |
| SRR358793 | seedling | wt | 0.49 | MC |
| SRR358794 | seedling | wt | 0.48 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.52 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.45 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.50 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.57 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.77 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.93 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.53 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.30 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.94 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.81 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.86 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.30 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 3.23 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.42 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.28 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.44 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.32 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.82 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.38 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.78 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.99 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.30 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.11 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.03 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.47 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.09 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.04 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.84 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.87 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.74 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.64 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.08 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.84 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.12 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.75 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.55 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.00 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.80 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.50 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.11 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.59 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.85 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.36 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.46 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.51 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.28 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.29 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.58 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.71 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.30 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.46 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.30 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.24 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.06 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.55 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.54 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.00 | MC |