| SRR5560727 | caryopsis | wild_type | 2.85 | MC |
| SRR5560728 | caryopsis | wild_type | 0.98 | MC |
| SRR5560729 | caryopsis | wild_type | 0.94 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.46 | MC |
| SRR4947495 | root | control | 0.57 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.62 | MC |
| SRR7265402 | coleoptile | 2dA | 0.44 | MC |
| SRR7265403 | coleoptile | 2dN | 0.89 | MC |
| SRR7265404 | coleoptile | 2dN | 2.89 | MC |
| SRR7265405 | coleoptile | 2dN | 1.88 | MC |
| SRR7265410 | coleoptile | 3dN | 0.43 | MC |
| SRR7265411 | coleoptile | 3dN | 0.36 | MC |
| SRR7265413 | coleoptile | 4dA | 0.63 | MC |
| SRR7265414 | coleoptile | 4dA | 0.63 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.42 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.37 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.37 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.40 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.33 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.50 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.61 | MC |
| SRR7265379 | embryo | 1hN | 1.71 | MC |
| SRR7265380 | embryo | 1hN | 3.36 | MC |
| SRR7265381 | embryo | 1hN | 2.48 | MC |
| SRR7265388 | embryo | 12hA | 2.55 | MC |
| SRR7265389 | embryo | 12hA | 2.06 | MC |
| SRR7265390 | embryo | 12hA | 1.60 | MC |
| SRR7265395 | embryo | 24hA | 1.27 | MC |
| SRR7265396 | embryo | 24hA | 0.95 | MC |
| SRR7265397 | embryo | 24hN | 2.21 | MC |
| SRR7265398 | embryo | 24hN | 4.72 | MC |
| SRR7265399 | embryo | 24hN | 2.53 | MC |
| SRR2338869 | endosprem | high_temperature | 0.52 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.86 | MC |
| SRR8060836 | leaf | wild_type | 0.37 | MC |
| SRR8060837 | leaf | wild_type | 0.20 | MC |
| SRR8240818 | leaf | wild_type | 0.34 | MC |
| SRR8240819 | leaf | wild_type | 0.55 | MC |
| SRR8240820 | leaf | wild_type | 0.47 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.02 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.49 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.36 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.87 | MC |
| SRR504365 | leaf | wt | 0.43 | MC |
| SRR6417967 | leaf | H2O_control | 2.43 | MC |
| SRR6417968 | leaf | H2O_control | 1.89 | MC |
| SRR6417969 | leaf | H2O_control | 1.32 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.50 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.12 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.93 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.97 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.40 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.50 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.40 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.67 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.61 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.41 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.22 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.50 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.33 | MC |
| SRR6502088 | leaf | control | 0.73 | MC |
| SRR6502089 | leaf | control | 0.99 | MC |
| SRR6502090 | leaf | control | 0.55 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.45 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.58 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.64 | MC |
| SRR6502102 | leaf | control | 0.36 | MC |
| SRR5856927 | leaf | control | 0.68 | MC |
| SRR5856928 | leaf | control | 0.25 | MC |
| SRR5856930 | leaf | salt | 0.73 | MC |
| SRR5856931 | leaf | salt | 0.63 | MC |
| SRR5856932 | leaf | salt | 1.22 | MC |
| SRR5856933 | leaf | control | 0.32 | MC |
| SRR5856934 | leaf | control | 0.44 | MC |
| SRR5856935 | leaf | control | 0.29 | MC |
| SRR5856936 | leaf | salt | 1.69 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.24 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 8.50 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.91 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.63 | MC |
| SRR6168973 | leaf | none (control) | 3.82 | MC |
| SRR8582892 | panicle | PM | 0.75 | MC |
| SRR8582893 | panicle | PM | 0.33 | MC |
| SRR5110429 | panicle | Dawn | 1.69 | MC |
| SRR5110431 | panicle | Dawn | 1.85 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.89 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.51 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.70 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.32 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.25 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.81 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.39 | MC |
| SRR5110447 | panicle | Dusk | 2.35 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.55 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.41 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.15 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.92 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.22 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.48 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.83 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.24 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.75 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.77 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.19 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.27 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.90 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.80 | MC |
| SRR5126149 | root | "mock,1_day" | 2.91 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.70 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.65 | MC |
| SRR5126153 | root | "mock,7_days" | 1.00 | MC |
| SRR5126155 | root | "mock,7_days" | 1.44 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.82 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.45 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.69 | MC |
| SRR5126167 | root | "mock,14_days" | 3.72 | MC |
| SRR5126169 | root | "mock,14_days" | 1.09 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.66 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.89 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.66 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.76 | MC |
| SRR1213694 | root | wt | 1.19 | MC |
| SRR1213695 | root | wt | 0.35 | MC |
| SRR4947478 | root | control | 1.59 | MC |
| SRR4947479 | root | control | 1.12 | MC |
| SRR4947482 | root | Al | 3.00 | MC |
| SRR4947483 | root | Al | 2.63 | MC |
| SRR4947487 | root | control | 1.49 | MC |
| SRR4947490 | root | Al | 3.03 | MC |
| SRR4947491 | root | Al | 1.47 | MC |
| SRR4947494 | root | control | 2.00 | MC |
| SRR4947498 | root | Al | 2.39 | MC |
| SRR4947499 | root | Al | 0.90 | MC |
| SRR4947502 | root | control | 1.25 | MC |
| SRR4947503 | root | control | 1.04 | MC |
| SRR4947506 | root | Al | 3.49 | MC |
| SRR4947507 | root | Al | 1.07 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.23 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.04 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.20 | MC |
| SRR6502094 | root | control | 0.39 | MC |
| SRR6502096 | root | control | 0.38 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.43 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.40 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.38 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.54 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.24 | MC |
| SRR6441554 | seedling | wild_type | 0.42 | MC |
| SRR2154086 | seedling | wt | 1.44 | MC |
| SRR2154085 | seedling | wt | 0.82 | MC |
| SRR3098742 | seedling | wt | 0.18 | MC |
| SRR3098743 | seedling | wt | 0.26 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.76 | MC |
| SRR358791 | seedling | wt | 3.41 | MC |
| SRR358792 | seedling | wt | 2.69 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.10 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.57 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.08 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.13 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.47 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.92 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.74 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.47 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.09 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.75 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.97 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.32 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.67 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.48 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.53 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.39 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.34 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.47 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.84 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.06 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.06 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.15 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.50 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.99 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.50 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.67 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.76 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.27 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.04 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.15 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.03 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.75 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.63 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.38 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.95 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.31 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 3.05 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 3.29 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 3.29 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.26 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.17 | MC |