| SRR4457249 | 2nd_leaf | DAH4 | 2.68 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.79 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.83 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.14 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.28 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.71 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.64 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 4.00 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.80 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.38 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 3.19 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.87 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.42 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.52 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.11 | MC |
| SRR7265401 | coleoptile | 2dA | 0.37 | MC |
| SRR7265402 | coleoptile | 2dA | 0.47 | MC |
| SRR7265403 | coleoptile | 2dN | 0.71 | MC |
| SRR7265404 | coleoptile | 2dN | 0.58 | MC |
| SRR7265405 | coleoptile | 2dN | 0.60 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.54 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.89 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.50 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.38 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.15 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.27 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.66 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 3.33 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.48 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.53 | MC |
| SRR7265381 | embryo | 1hN | 0.59 | MC |
| SRR7265383 | embryo | 3hA | 0.64 | MC |
| SRR7265384 | embryo | 3hA | 0.40 | MC |
| SRR7265389 | embryo | 12hA | 1.80 | MC |
| SRR7265391 | embryo | 12hN | 1.94 | MC |
| SRR7265392 | embryo | 12hN | 1.82 | MC |
| SRR7265393 | embryo | 12hN | 1.58 | MC |
| SRR7265396 | embryo | 24hA | 0.84 | MC |
| SRR7265397 | embryo | 24hN | 1.49 | MC |
| SRR7265399 | embryo | 24hN | 0.73 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.35 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.67 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.09 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.46 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.86 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.54 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.23 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.53 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.24 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.61 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.14 | MC |
| SRR4457244 | flag_leaf | DAH36 | 3.16 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.16 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.44 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.06 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.11 | MC |
| SRR8240824 | leaf | wild_type | 0.34 | MC |
| SRR8240825 | leaf | wild_type | 0.40 | MC |
| SRR8240826 | leaf | wild_type | 0.54 | MC |
| SRR8240819 | leaf | wild_type | 0.87 | MC |
| SRR8240820 | leaf | wild_type | 1.09 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.57 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.88 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.73 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.85 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.43 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.25 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.46 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.20 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.69 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.67 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.68 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.49 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.66 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.89 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.53 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.91 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.69 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.80 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.11 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.37 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.11 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.76 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.90 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.65 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.26 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.79 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.95 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.79 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.95 | MC |
| SRR1761528 | leaf | drought | 3.79 | MC |
| SRR1761530 | leaf | control | 2.95 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.09 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.84 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.73 | MC |
| SRR6417968 | leaf | H2O_control | 2.33 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.76 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.89 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.35 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.52 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.00 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.17 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.82 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.36 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.81 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.68 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.93 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.33 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.86 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.57 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.22 | MC |
| SRR1213692 | leaf | wt | 1.08 | MC |
| SRR1213693 | leaf | wt | 2.79 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.42 | MC |
| SRR5856927 | leaf | control | 0.33 | MC |
| SRR5856928 | leaf | control | 2.03 | MC |
| SRR5856929 | leaf | control | 0.94 | MC |
| SRR5856930 | leaf | salt | 0.21 | MC |
| SRR5856931 | leaf | salt | 0.26 | MC |
| SRR5856932 | leaf | salt | 0.32 | MC |
| SRR5856933 | leaf | control | 1.02 | MC |
| SRR5856934 | leaf | control | 1.26 | MC |
| SRR5856935 | leaf | control | 0.87 | MC |
| SRR5856936 | leaf | salt | 0.61 | MC |
| SRR5856937 | leaf | salt | 0.98 | MC |
| SRR5856938 | leaf | salt | 0.48 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.37 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.36 | MC |
| SRR8582888 | panicle | AM | 0.70 | MC |
| SRR8582890 | panicle | AM | 0.47 | MC |
| SRR8582893 | panicle | PM | 0.80 | MC |
| SRR1633185 | panicle | WT | 3.15 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.89 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.95 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.53 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.83 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.95 | MC |
| SRR1213695 | root | wt | 2.12 | MC |
| SRR6441554 | seedling | wild_type | 0.55 | MC |
| SRR6441555 | seedling | wild_type | 0.50 | MC |
| SRR2154086 | seedling | wt | 1.70 | MC |
| SRR2154085 | seedling | wt | 0.54 | MC |
| SRR2154087 | seedling | wt | 0.72 | MC |
| SRR3098741 | seedling | wt | 0.53 | MC |
| SRR3098742 | seedling | wt | 0.25 | MC |
| SRR3098743 | seedling | wt | 0.77 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.69 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.72 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.70 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.91 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.07 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.47 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.87 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.68 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.91 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.89 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.05 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.80 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.76 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.00 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.78 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.09 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.74 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.85 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.34 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.29 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.71 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.29 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.68 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.85 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.47 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.89 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.43 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.05 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.78 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.01 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.22 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.84 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.58 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.46 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.32 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.46 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.26 | MC |