| SRR5560727 | caryopsis | wild_type | 0.88 | MC |
| SRR5560728 | caryopsis | wild_type | 0.64 | MC |
| SRR5560729 | caryopsis | wild_type | 0.48 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.97 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.73 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.56 | MC |
| SRR7265403 | coleoptile | 2dN | 0.41 | MC |
| SRR7265404 | coleoptile | 2dN | 2.07 | MC |
| SRR7265405 | coleoptile | 2dN | 1.17 | MC |
| SRR7265388 | embryo | 12hA | 4.53 | MC |
| SRR7265395 | embryo | 24hA | 2.38 | MC |
| SRR7265396 | embryo | 24hA | 1.04 | MC |
| SRR7265397 | embryo | 24hN | 2.37 | MC |
| SRR1213691 | flower | wt | 0.42 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.57 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.41 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.10 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.99 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.86 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.86 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.70 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.91 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.58 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.63 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.11 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.52 | MC |
| SRR504365 | leaf | wt | 0.20 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.75 | MC |
| SRR6417968 | leaf | H2O_control | 0.52 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.37 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.21 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.29 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.51 | MC |
| SRR6502088 | leaf | control | 0.35 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.24 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.85 | MC |
| SRR5856927 | leaf | control | 2.33 | MC |
| SRR5856928 | leaf | control | 2.04 | MC |
| SRR5856929 | leaf | control | 0.53 | MC |
| SRR5856933 | leaf | control | 0.24 | MC |
| SRR5856934 | leaf | control | 1.22 | MC |
| SRR5856935 | leaf | control | 1.44 | MC |
| SRR6168973 | leaf | none (control) | 1.59 | MC |
| SRR6168974 | leaf | none (control) | 4.86 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.51 | MC |
| SRR5110429 | panicle | Dawn | 0.37 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.72 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.63 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.12 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.12 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.40 | MC |
| SRR5110446 | panicle | Dusk | 0.66 | MC |
| SRR5110448 | panicle | Dusk | 0.96 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.87 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.18 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.51 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.63 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.47 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.39 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.48 | MC |
| SRR1633185 | panicle | WT | 1.08 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.44 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.48 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.43 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.57 | MC |
| SRR5126147 | root | "mock,1_day" | 0.99 | MC |
| SRR5126148 | root | "mock,1_day" | 1.23 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.60 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.96 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.34 | MC |
| SRR5126153 | root | "mock,7_days" | 0.68 | MC |
| SRR5126155 | root | "mock,7_days" | 1.11 | MC |
| SRR5126157 | root | "mock,7_days" | 4.55 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.07 | MC |
| SRR5126165 | root | "mock,14_days" | 3.05 | MC |
| SRR5126169 | root | "mock,14_days" | 3.31 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.81 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.27 | MC |
| SRR4947481 | root | control | 0.86 | MC |
| SRR4947482 | root | Al | 1.71 | MC |
| SRR4947483 | root | Al | 1.04 | MC |
| SRR4947487 | root | control | 0.83 | MC |
| SRR4947490 | root | Al | 1.97 | MC |
| SRR4947502 | root | control | 0.91 | MC |
| SRR4947503 | root | control | 2.71 | MC |
| SRR4947506 | root | Al | 2.61 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.30 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.03 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.76 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.52 | MC |
| SRR2154082 | seedling | wt | 0.73 | MC |
| SRR2154083 | seedling | wt | 0.55 | MC |
| SRR2154084 | seedling | wt | 0.41 | MC |
| SRR2154087 | seedling | wt | 0.44 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.67 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.64 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 4.41 | MC |
| SRR1944583 | seedling | no_treatment | 1.91 | MC |
| SRR358791 | seedling | wt | 1.12 | MC |
| SRR358792 | seedling | wt | 0.77 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.53 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.72 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.63 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.43 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.58 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.17 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.43 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.25 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.56 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.32 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.05 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.74 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.22 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.30 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.35 | MC |