| SRR4457249 | 2nd_leaf | DAH4 | 4.00 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 3.29 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.43 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 3.74 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.45 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.60 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.04 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 4.32 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.72 | MC |
| SRR358795 | callus | wt | 3.03 | MC |
| SRR358796 | callus | wt | 3.46 | MC |
| SRR358797 | callus | wt | 2.75 | MC |
| SRR358798 | callus | wt | 1.89 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.65 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.51 | MC |
| SRR4947495 | root | control | 2.01 | MC |
| SRR7265400 | coleoptile | 2dA | 1.69 | MC |
| SRR7265401 | coleoptile | 2dA | 1.51 | MC |
| SRR7265402 | coleoptile | 2dA | 1.85 | MC |
| SRR7265414 | coleoptile | 4dA | 2.46 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.41 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.77 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.17 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.70 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.90 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.47 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.87 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.90 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.80 | MC |
| SRR7265394 | embryo | 24hA | 3.64 | MC |
| SRR7265395 | embryo | 24hA | 4.76 | MC |
| SRR7265396 | embryo | 24hA | 4.07 | MC |
| SRR2338866 | endosprem | control | 3.69 | MC |
| SRR2338869 | endosprem | high_temperature | 2.78 | MC |
| SRR976168 | flag_leaf | wild_type | 1.90 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.37 | MC |
| SRR4457242 | flag_leaf | DAH28 | 3.26 | MC |
| SRR4457248 | flag_leaf | DAH44 | 3.85 | MC |
| SRR8240825 | leaf | wild_type | 2.08 | MC |
| SRR8240826 | leaf | wild_type | 2.34 | MC |
| SRR8240818 | leaf | wild_type | 1.73 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.70 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.60 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.55 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.17 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.62 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.04 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.72 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.20 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.78 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.07 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.96 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.89 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.23 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.29 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.78 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.17 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.02 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.63 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.49 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.05 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.40 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.36 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.53 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.18 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.13 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.63 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.31 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.65 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.31 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.65 | MC |
| SRR1761530 | leaf | control | 2.31 | MC |
| SRR1761531 | leaf | control | 2.65 | MC |
| SRR504365 | leaf | wt | 3.46 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.86 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.38 | MC |
| SRR6417967 | leaf | H2O_control | 2.73 | MC |
| SRR6417968 | leaf | H2O_control | 3.05 | MC |
| SRR6417969 | leaf | H2O_control | 2.81 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.55 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.96 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.47 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 3.20 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.45 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.45 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.35 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.00 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.85 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.97 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.06 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.61 | MC |
| SRR6502088 | leaf | control | 3.93 | MC |
| SRR6502089 | leaf | control | 3.78 | MC |
| SRR6502090 | leaf | control | 2.93 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 4.05 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.75 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 4.06 | MC |
| SRR6502100 | leaf | control | 3.92 | MC |
| SRR6502101 | leaf | control | 3.72 | MC |
| SRR6502102 | leaf | control | 4.36 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.30 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 3.89 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 4.72 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 5.91 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.79 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 4.97 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 4.99 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.26 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.98 | MC |
| SRR6168973 | leaf | none (control) | 0.53 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.75 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.86 | MC |
| SRR6168979 | leaf | none (control) | 0.46 | MC |
| SRR6168980 | leaf | none (control) | 0.37 | MC |
| SRR6168981 | leaf | none (control) | 0.54 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.30 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.58 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.70 | MC |
| SRR8582888 | panicle | AM | 2.81 | MC |
| SRR8582890 | panicle | AM | 1.20 | MC |
| SRR8582891 | panicle | PM | 2.60 | MC |
| SRR8582892 | panicle | PM | 3.31 | MC |
| SRR8582893 | panicle | PM | 2.80 | MC |
| SRR4947496 | root | control | 4.60 | MC |
| SRR1633182 | panicle | WT | 0.58 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.35 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.75 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.67 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.40 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.44 | MC |
| SRR5126147 | root | "mock,1_day" | 2.16 | MC |
| SRR5126148 | root | "mock,1_day" | 1.69 | MC |
| SRR5126149 | root | "mock,1_day" | 3.06 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.81 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.77 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.13 | MC |
| SRR5126153 | root | "mock,7_days" | 1.24 | MC |
| SRR5126155 | root | "mock,7_days" | 1.56 | MC |
| SRR5126157 | root | "mock,7_days" | 1.12 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.08 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.57 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.03 | MC |
| SRR5126165 | root | "mock,14_days" | 2.35 | MC |
| SRR5126167 | root | "mock,14_days" | 2.45 | MC |
| SRR5126169 | root | "mock,14_days" | 2.13 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.83 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.25 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.03 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.28 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.06 | MC |
| SRR4947478 | root | control | 1.12 | MC |
| SRR4947479 | root | control | 2.08 | MC |
| SRR4947480 | root | control | 4.28 | MC |
| SRR4947481 | root | control | 2.25 | MC |
| SRR4947482 | root | Al | 1.70 | MC |
| SRR4947483 | root | Al | 2.93 | MC |
| SRR4947484 | root | Al | 3.34 | MC |
| SRR4947485 | root | Al | 2.76 | MC |
| SRR4947487 | root | control | 2.93 | MC |
| SRR4947488 | root | control | 4.66 | MC |
| SRR4947489 | root | control | 2.87 | MC |
| SRR4947490 | root | Al | 2.41 | MC |
| SRR4947491 | root | Al | 3.12 | MC |
| SRR4947492 | root | Al | 5.67 | MC |
| SRR4947493 | root | Al | 3.25 | MC |
| SRR4947494 | root | control | 1.51 | MC |
| SRR4947497 | root | control | 3.60 | MC |
| SRR4947498 | root | Al | 3.21 | MC |
| SRR4947499 | root | Al | 2.48 | MC |
| SRR4947500 | root | Al | 5.00 | MC |
| SRR4947501 | root | Al | 3.59 | MC |
| SRR4947502 | root | control | 3.58 | MC |
| SRR4947503 | root | control | 3.34 | MC |
| SRR4947505 | root | control | 4.68 | MC |
| SRR4947506 | root | Al | 3.82 | MC |
| SRR4947507 | root | Al | 3.80 | MC |
| SRR4947509 | root | Al | 4.17 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.18 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.34 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.44 | MC |
| SRR6502094 | root | control | 0.46 | MC |
| SRR6502095 | root | control | 0.66 | MC |
| SRR6502096 | root | control | 0.54 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.76 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.65 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.16 | MC |
| SRR6502106 | root | control | 1.27 | MC |
| SRR6502107 | root | control | 1.65 | MC |
| SRR6502108 | root | control | 2.09 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.25 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.55 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.72 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.20 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.28 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.54 | MC |
| SRR6441554 | seedling | wild_type | 2.08 | MC |
| SRR2154086 | seedling | wt | 4.03 | MC |
| SRR2154085 | seedling | wt | 3.93 | MC |
| SRR2154087 | seedling | wt | 3.80 | MC |
| SRR3098741 | seedling | wt | 1.58 | MC |
| SRR3098742 | seedling | wt | 1.34 | MC |
| SRR3098743 | seedling | wt | 1.14 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.61 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.66 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.32 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.55 | MC |
| SRR1944583 | seedling | no_treatment | 3.25 | MC |
| SRR358791 | seedling | wt | 7.10 | MC |
| SRR358792 | seedling | wt | 7.35 | MC |
| SRR358793 | seedling | wt | 5.59 | MC |
| SRR358794 | seedling | wt | 5.30 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.21 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.12 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.99 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.72 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.90 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.33 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.96 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.27 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.50 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 4.04 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.97 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.91 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.85 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.82 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.10 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.71 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.03 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.58 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.71 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.04 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.96 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.24 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.04 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.94 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.29 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.30 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.82 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.91 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.01 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.91 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 4.52 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.38 | MC |