| SRR3745125 | anther | wt | 2.37 | MC |
| SRR3745127 | anther | wt | 4.84 | MC |
| SRR358795 | callus | wt | 3.20 | MC |
| SRR358796 | callus | wt | 3.49 | MC |
| SRR358797 | callus | wt | 4.16 | MC |
| SRR358798 | callus | wt | 3.89 | MC |
| SRR5560727 | caryopsis | wild_type | 2.25 | MC |
| SRR5560728 | caryopsis | wild_type | 1.56 | MC |
| SRR5560729 | caryopsis | wild_type | 1.91 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.58 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.96 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.97 | MC |
| SRR7265400 | coleoptile | 2dA | 0.69 | MC |
| SRR7265401 | coleoptile | 2dA | 0.40 | MC |
| SRR7265402 | coleoptile | 2dA | 0.66 | MC |
| SRR7265403 | coleoptile | 2dN | 1.27 | MC |
| SRR7265404 | coleoptile | 2dN | 1.27 | MC |
| SRR7265405 | coleoptile | 2dN | 1.22 | MC |
| SRR7265407 | coleoptile | 3dA | 0.41 | MC |
| SRR7265409 | coleoptile | 3dN | 1.66 | MC |
| SRR7265410 | coleoptile | 3dN | 0.68 | MC |
| SRR7265411 | coleoptile | 3dN | 0.87 | MC |
| SRR7265415 | coleoptile | 4dN | 2.02 | MC |
| SRR7265416 | coleoptile | 4dN | 1.71 | MC |
| SRR7265417 | coleoptile | 4dN | 1.14 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.18 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.89 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.62 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.33 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.07 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.42 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.02 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.46 | MC |
| SRR7265376 | embryo | 1hA | 0.68 | MC |
| SRR7265377 | embryo | 1hA | 1.20 | MC |
| SRR7265378 | embryo | 1hA | 1.34 | MC |
| SRR7265379 | embryo | 1hN | 1.14 | MC |
| SRR7265380 | embryo | 1hN | 1.14 | MC |
| SRR7265381 | embryo | 1hN | 1.33 | MC |
| SRR7265382 | embryo | 3hA | 0.64 | MC |
| SRR7265383 | embryo | 3hA | 1.48 | MC |
| SRR7265384 | embryo | 3hA | 1.27 | MC |
| SRR7265385 | embryo | 3hN | 1.14 | MC |
| SRR7265386 | embryo | 3hN | 1.50 | MC |
| SRR7265387 | embryo | 3hN | 1.31 | MC |
| SRR7265388 | embryo | 12hA | 1.80 | MC |
| SRR7265389 | embryo | 12hA | 1.73 | MC |
| SRR7265390 | embryo | 12hA | 1.87 | MC |
| SRR7265391 | embryo | 12hN | 1.47 | MC |
| SRR7265392 | embryo | 12hN | 0.76 | MC |
| SRR7265393 | embryo | 12hN | 0.81 | MC |
| SRR7265394 | embryo | 24hA | 1.64 | MC |
| SRR7265395 | embryo | 24hA | 0.78 | MC |
| SRR7265396 | embryo | 24hA | 1.30 | MC |
| SRR7265397 | embryo | 24hN | 1.33 | MC |
| SRR7265398 | embryo | 24hN | 1.20 | MC |
| SRR7265399 | embryo | 24hN | 1.01 | MC |
| SRR2338869 | endosprem | high_temperature | 0.71 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.47 | MC |
| SRR1213691 | flower | wt | 2.32 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.38 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.50 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.37 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.61 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.04 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.95 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.73 | MC |
| SRR6502088 | leaf | control | 1.14 | MC |
| SRR6502089 | leaf | control | 1.01 | MC |
| SRR6502090 | leaf | control | 1.36 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.77 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.31 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.14 | MC |
| SRR6502101 | leaf | control | 1.09 | MC |
| SRR6502102 | leaf | control | 1.15 | MC |
| SRR6168973 | leaf | none (control) | 0.72 | MC |
| SRR6168974 | leaf | none (control) | 0.87 | MC |
| SRR6168980 | leaf | none (control) | 0.32 | MC |
| SRR6168981 | leaf | none (control) | 0.51 | MC |
| SRR8582890 | panicle | AM | 0.27 | MC |
| SRR4947496 | root | control | 0.78 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.74 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.37 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.60 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.36 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.68 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.71 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.06 | MC |
| SRR1633185 | panicle | WT | 0.73 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.26 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.85 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.88 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.64 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.99 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.59 | MC |
| SRR5126147 | root | "mock,1_day" | 0.68 | MC |
| SRR5126148 | root | "mock,1_day" | 0.35 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.02 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.32 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.54 | MC |
| SRR5126153 | root | "mock,7_days" | 0.41 | MC |
| SRR5126155 | root | "mock,7_days" | 0.52 | MC |
| SRR5126157 | root | "mock,7_days" | 0.39 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.09 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.12 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.05 | MC |
| SRR5126167 | root | "mock,14_days" | 0.48 | MC |
| SRR5126169 | root | "mock,14_days" | 0.72 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.36 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.87 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.91 | MC |
| SRR1213694 | root | wt | 0.32 | MC |
| SRR4947480 | root | control | 0.67 | MC |
| SRR4947481 | root | control | 1.33 | MC |
| SRR4947485 | root | Al | 0.98 | MC |
| SRR4947488 | root | control | 1.16 | MC |
| SRR4947489 | root | control | 0.81 | MC |
| SRR4947492 | root | Al | 0.73 | MC |
| SRR4947497 | root | control | 1.56 | MC |
| SRR4947500 | root | Al | 1.79 | MC |
| SRR4947501 | root | Al | 2.30 | MC |
| SRR4947504 | root | control | 1.26 | MC |
| SRR4947505 | root | control | 2.02 | MC |
| SRR4947508 | root | Al | 0.76 | MC |
| SRR4947509 | root | Al | 0.88 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.02 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.53 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.91 | MC |
| SRR6502094 | root | control | 1.29 | MC |
| SRR6502095 | root | control | 0.85 | MC |
| SRR6502096 | root | control | 0.59 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.16 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.16 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.48 | MC |
| SRR6502106 | root | control | 1.36 | MC |
| SRR6502107 | root | control | 0.84 | MC |
| SRR6502108 | root | control | 0.77 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.06 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.34 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.76 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.53 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.86 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.86 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.93 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.04 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.63 | MC |
| SRR2154086 | seedling | wt | 0.50 | MC |
| SRR2154082 | seedling | wt | 0.68 | MC |
| SRR2154083 | seedling | wt | 0.82 | MC |
| SRR2154084 | seedling | wt | 0.92 | MC |
| SRR2154085 | seedling | wt | 0.86 | MC |
| SRR2154087 | seedling | wt | 0.73 | MC |
| SRR3098741 | seedling | wt | 0.18 | MC |
| SRR3098742 | seedling | wt | 0.20 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.58 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.55 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.65 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.63 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.36 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.51 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.55 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.04 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.91 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.51 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 4.62 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.70 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.60 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 5.25 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.15 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.63 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.00 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.56 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.01 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.44 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.01 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.46 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.34 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.92 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.71 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.60 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.04 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.66 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.02 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.39 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.04 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.39 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.82 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.22 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.35 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.95 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.66 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.93 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.68 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.33 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.45 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.66 | MC |