| SRR4457264 | 2nd_leaf | DAH44 | 3.36 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 4.27 | MC |
| SRR358795 | callus | wt | 6.85 | MC |
| SRR358796 | callus | wt | 4.83 | MC |
| SRR358797 | callus | wt | 6.39 | MC |
| SRR358798 | callus | wt | 4.63 | MC |
| SRR6320498 | carpel | wt | 3.88 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.05 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.66 | MC |
| SRR7265400 | coleoptile | 2dA | 3.57 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.51 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.39 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.78 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.29 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.85 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.44 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.43 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.85 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.89 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.53 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.27 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.60 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.64 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.37 | MC |
| SRR7265376 | embryo | 1hA | 2.86 | MC |
| SRR7265377 | embryo | 1hA | 3.08 | MC |
| SRR7265379 | embryo | 1hN | 2.83 | MC |
| SRR2338866 | endosprem | control | 2.10 | MC |
| SRR2338867 | endosprem | control | 1.17 | MC |
| SRR2338868 | endosprem | high_temperature | 1.26 | MC |
| SRR976168 | flag_leaf | wild_type | 0.76 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.58 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.28 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.36 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.33 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.86 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.65 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.40 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.66 | MC |
| SRR4457247 | flag_leaf | DAH44 | 4.57 | MC |
| SRR4457248 | flag_leaf | DAH44 | 4.08 | MC |
| SRR8240824 | leaf | wild_type | 2.07 | MC |
| SRR8240825 | leaf | wild_type | 2.03 | MC |
| SRR8240826 | leaf | wild_type | 1.67 | MC |
| SRR8240818 | leaf | wild_type | 0.75 | MC |
| SRR8240819 | leaf | wild_type | 1.58 | MC |
| SRR8240820 | leaf | wild_type | 1.68 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.01 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.78 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.70 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.36 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 9.18 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.05 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 5.28 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 5.28 | MC |
| SRR1761528 | leaf | drought | 5.28 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.45 | MC |
| SRR6417967 | leaf | H2O_control | 3.10 | MC |
| SRR6417968 | leaf | H2O_control | 2.49 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.94 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 3.02 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 4.03 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.93 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.10 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.29 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.41 | MC |
| SRR5856928 | leaf | control | 0.25 | MC |
| SRR5856929 | leaf | control | 0.50 | MC |
| SRR5856933 | leaf | control | 0.22 | MC |
| SRR5856934 | leaf | control | 0.31 | MC |
| SRR5856935 | leaf | control | 0.33 | MC |
| SRR5856936 | leaf | salt | 0.22 | MC |
| SRR5856937 | leaf | salt | 0.17 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 4.02 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.65 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 4.95 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 3.80 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 7.36 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.75 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 5.40 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 3.72 | MC |
| SRR6168973 | leaf | none (control) | 4.36 | MC |
| SRR6168974 | leaf | none (control) | 4.82 | MC |
| SRR6168975 | leaf | none (control) | 4.82 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 5.60 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 6.29 | MC |
| SRR6168979 | leaf | none (control) | 0.29 | MC |
| SRR6168980 | leaf | none (control) | 0.61 | MC |
| SRR6168981 | leaf | none (control) | 2.01 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.07 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.33 | MC |
| SRR8582888 | panicle | AM | 2.73 | MC |
| SRR8582889 | panicle | AM | 1.27 | MC |
| SRR5110430 | panicle | Dawn | 5.52 | MC |
| SRR5110432 | panicle | Dawn | 3.81 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.57 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.45 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.18 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.96 | MC |
| SRR5110440 | panicle | Dawn + 7h | 4.97 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.76 | MC |
| SRR5110449 | panicle | Dawn + 14h | 4.95 | MC |
| SRR5110458 | panicle | Dawn + 21h | 3.31 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.84 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.37 | MC |
| SRR1633182 | panicle | WT | 2.73 | MC |
| SRR1633185 | panicle | WT | 2.71 | MC |
| SRR5126147 | root | "mock,1_day" | 1.03 | MC |
| SRR5126148 | root | "mock,1_day" | 1.01 | MC |
| SRR5126149 | root | "mock,1_day" | 1.89 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.77 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.66 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.57 | MC |
| SRR5126153 | root | "mock,7_days" | 2.32 | MC |
| SRR5126155 | root | "mock,7_days" | 2.40 | MC |
| SRR5126157 | root | "mock,7_days" | 4.42 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.77 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.48 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.60 | MC |
| SRR5126165 | root | "mock,14_days" | 1.16 | MC |
| SRR5126167 | root | "mock,14_days" | 2.50 | MC |
| SRR5126169 | root | "mock,14_days" | 2.49 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.60 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.09 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.97 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.62 | MC |
| SRR4947480 | root | control | 1.15 | MC |
| SRR4947481 | root | control | 1.38 | MC |
| SRR4947488 | root | control | 0.52 | MC |
| SRR4947491 | root | Al | 0.49 | MC |
| SRR4947494 | root | control | 0.96 | MC |
| SRR4947498 | root | Al | 1.05 | MC |
| SRR4947501 | root | Al | 0.90 | MC |
| SRR4947502 | root | control | 0.71 | MC |
| SRR4947504 | root | control | 1.17 | MC |
| SRR4947508 | root | Al | 0.72 | MC |
| SRR4947509 | root | Al | 2.09 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.38 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.84 | MC |
| SRR6502094 | root | control | 0.81 | MC |
| SRR6502096 | root | control | 0.78 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.53 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.08 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.10 | MC |
| SRR6502106 | root | control | 1.41 | MC |
| SRR6502107 | root | control | 1.60 | MC |
| SRR6502108 | root | control | 0.95 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.26 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.24 | MC |
| SRR2154082 | seedling | wt | 3.03 | MC |
| SRR2154085 | seedling | wt | 3.56 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.38 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.62 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.44 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.14 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.50 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.37 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 3.67 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.96 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.56 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.28 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.42 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.29 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.13 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.16 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.08 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.81 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.43 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.44 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.72 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.21 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.52 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.70 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 5.51 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.83 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.50 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.07 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.35 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.97 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.26 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.55 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 7.68 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.60 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.77 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.92 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.96 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.04 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.40 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.23 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.06 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.00 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.81 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.15 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.99 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.42 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.29 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.60 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.19 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.95 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.67 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.40 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.25 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.42 | MC |