| SRR4457249 | 2nd_leaf | DAH4 | 3.60 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.70 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 4.07 | MC |
| SRR6320473 | carpel | wt | 3.12 | MC |
| SRR6320498 | carpel | wt | 2.11 | MC |
| SRR7265401 | coleoptile | 2dA | 0.30 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.40 | MC |
| SRR7265380 | embryo | 1hN | 0.60 | MC |
| SRR7265381 | embryo | 1hN | 0.23 | MC |
| SRR7265382 | embryo | 3hA | 0.41 | MC |
| SRR7265383 | embryo | 3hA | 0.44 | MC |
| SRR7265384 | embryo | 3hA | 0.78 | MC |
| SRR2338867 | endosprem | control | 0.99 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.14 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.50 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.52 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.58 | MC |
| SRR4457240 | flag_leaf | DAH28 | 4.59 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.69 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.71 | MC |
| SRR4457247 | flag_leaf | DAH44 | 5.17 | MC |
| SRR4457248 | flag_leaf | DAH44 | 5.94 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.26 | MC |
| SRR1213691 | flower | wt | 3.64 | MC |
| SRR8060835 | leaf | wild_type | 0.52 | MC |
| SRR8060836 | leaf | wild_type | 0.38 | MC |
| SRR8060837 | leaf | wild_type | 0.37 | MC |
| SRR8240824 | leaf | wild_type | 1.12 | MC |
| SRR8240825 | leaf | wild_type | 0.71 | MC |
| SRR8240826 | leaf | wild_type | 0.28 | MC |
| SRR8240818 | leaf | wild_type | 1.03 | MC |
| SRR8240819 | leaf | wild_type | 0.71 | MC |
| SRR8240820 | leaf | wild_type | 1.10 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.41 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.08 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.09 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.01 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.04 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.65 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.96 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.61 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.29 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.35 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.90 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.58 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.05 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.80 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.73 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.47 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.32 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.67 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.51 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.46 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.73 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.14 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.07 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.07 | MC |
| SRR1761530 | leaf | control | 1.07 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.92 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.61 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.76 | MC |
| SRR6417968 | leaf | H2O_control | 0.44 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.33 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.49 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.22 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.27 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.83 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.18 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.65 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.54 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.87 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.03 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.37 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.67 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.80 | MC |
| SRR5856930 | leaf | salt | 0.18 | MC |
| SRR5856931 | leaf | salt | 0.15 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.19 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 4.70 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 7.33 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.18 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.08 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.72 | MC |
| SRR6168973 | leaf | none (control) | 1.49 | MC |
| SRR6168974 | leaf | none (control) | 1.27 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.96 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.12 | MC |
| SRR6168981 | leaf | none (control) | 0.59 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.85 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.37 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.22 | MC |
| SRR8582892 | panicle | PM | 0.88 | MC |
| SRR8582893 | panicle | PM | 0.28 | MC |
| SRR5110431 | panicle | Dawn | 3.65 | MC |
| SRR5110432 | panicle | Dawn | 1.10 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.22 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.37 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.64 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.82 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.65 | MC |
| SRR5110439 | panicle | Dawn + 7h | 4.21 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.54 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.92 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.41 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.78 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.42 | MC |
| SRR5110445 | panicle | Dusk | 2.98 | MC |
| SRR5110446 | panicle | Dusk | 2.30 | MC |
| SRR5110447 | panicle | Dusk | 1.24 | MC |
| SRR5110448 | panicle | Dusk | 1.93 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.09 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.19 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.39 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.21 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.57 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.23 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.91 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.27 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.72 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.51 | MC |
| SRR5110460 | panicle | Dawn + 21h | 4.20 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.12 | MC |
| SRR1633182 | panicle | WT | 2.23 | MC |
| SRR1633185 | panicle | WT | 2.84 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.24 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.29 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.59 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.81 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.23 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.97 | MC |
| SRR5126147 | root | "mock,1_day" | 0.65 | MC |
| SRR5126148 | root | "mock,1_day" | 0.60 | MC |
| SRR5126149 | root | "mock,1_day" | 0.63 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.51 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.47 | MC |
| SRR5126153 | root | "mock,7_days" | 0.29 | MC |
| SRR5126155 | root | "mock,7_days" | 0.80 | MC |
| SRR5126157 | root | "mock,7_days" | 1.91 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.23 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.05 | MC |
| SRR5126165 | root | "mock,14_days" | 1.23 | MC |
| SRR5126167 | root | "mock,14_days" | 1.29 | MC |
| SRR5126169 | root | "mock,14_days" | 2.25 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.15 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.51 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.45 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.92 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.61 | MC |
| SRR1213694 | root | wt | 2.40 | MC |
| SRR4947480 | root | control | 0.90 | MC |
| SRR4947492 | root | Al | 0.58 | MC |
| SRR4947493 | root | Al | 0.50 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.14 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.50 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.71 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.62 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.84 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.28 | MC |
| SRR6441554 | seedling | wild_type | 0.79 | MC |
| SRR6441555 | seedling | wild_type | 0.88 | MC |
| SRR2154086 | seedling | wt | 1.34 | MC |
| SRR2154085 | seedling | wt | 0.82 | MC |
| SRR3098741 | seedling | wt | 1.25 | MC |
| SRR3098742 | seedling | wt | 0.72 | MC |
| SRR3098743 | seedling | wt | 0.95 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.46 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.33 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.39 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.15 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.52 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.19 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.69 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.39 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.83 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.59 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.54 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.95 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.31 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 3.86 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.66 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.35 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.74 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.33 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.99 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.78 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.78 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.69 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.54 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.01 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.55 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.11 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.03 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.37 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.98 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.01 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.17 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.14 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.01 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.76 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.76 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.66 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.14 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.01 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 1.88 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.61 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.61 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.19 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.94 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.19 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.28 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.90 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.96 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.19 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.99 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.18 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 3.16 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.92 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.04 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.97 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.53 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.93 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.42 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.77 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.63 | MC |