| SRR4457249 | 2nd_leaf | DAH4 | 4.84 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 3.93 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.49 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.47 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.47 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.52 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.47 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.24 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.33 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.27 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.22 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 3.45 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.96 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.06 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.25 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.98 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.44 | MC |
| SRR3745125 | anther | wt | 2.88 | MC |
| SRR3745126 | anther | wt | 2.04 | MC |
| SRR3745127 | anther | wt | 1.76 | MC |
| SRR6320473 | carpel | wt | 4.95 | MC |
| SRR6320498 | carpel | wt | 3.38 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.28 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.13 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.07 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.97 | MC |
| SRR7265400 | coleoptile | 2dA | 3.23 | MC |
| SRR7265401 | coleoptile | 2dA | 3.42 | MC |
| SRR7265403 | coleoptile | 2dN | 4.38 | MC |
| SRR7265406 | coleoptile | 3dA | 3.17 | MC |
| SRR7265407 | coleoptile | 3dA | 2.83 | MC |
| SRR7265408 | coleoptile | 3dA | 2.59 | MC |
| SRR7265409 | coleoptile | 3dN | 2.48 | MC |
| SRR7265410 | coleoptile | 3dN | 2.71 | MC |
| SRR7265411 | coleoptile | 3dN | 2.55 | MC |
| SRR7265415 | coleoptile | 4dN | 3.28 | MC |
| SRR7265416 | coleoptile | 4dN | 2.17 | MC |
| SRR7265417 | coleoptile | 4dN | 2.23 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.42 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.13 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.06 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.34 | MC |
| SRR7265376 | embryo | 1hA | 1.18 | MC |
| SRR7265377 | embryo | 1hA | 1.01 | MC |
| SRR7265378 | embryo | 1hA | 0.94 | MC |
| SRR7265379 | embryo | 1hN | 0.96 | MC |
| SRR7265380 | embryo | 1hN | 1.20 | MC |
| SRR7265381 | embryo | 1hN | 1.35 | MC |
| SRR7265382 | embryo | 3hA | 1.98 | MC |
| SRR7265383 | embryo | 3hA | 1.64 | MC |
| SRR7265384 | embryo | 3hA | 2.26 | MC |
| SRR7265385 | embryo | 3hN | 1.25 | MC |
| SRR7265386 | embryo | 3hN | 1.19 | MC |
| SRR7265387 | embryo | 3hN | 1.33 | MC |
| SRR7265388 | embryo | 12hA | 4.55 | MC |
| SRR7265390 | embryo | 12hA | 4.49 | MC |
| SRR7265391 | embryo | 12hN | 3.86 | MC |
| SRR7265392 | embryo | 12hN | 3.15 | MC |
| SRR7265393 | embryo | 12hN | 3.87 | MC |
| SRR7265394 | embryo | 24hA | 4.87 | MC |
| SRR7265396 | embryo | 24hA | 4.25 | MC |
| SRR7265397 | embryo | 24hN | 4.78 | MC |
| SRR7265398 | embryo | 24hN | 3.27 | MC |
| SRR7265399 | embryo | 24hN | 4.33 | MC |
| SRR2338866 | endosprem | control | 4.46 | MC |
| SRR976168 | flag_leaf | wild_type | 0.91 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.25 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.70 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.29 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.29 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.55 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.98 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.20 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.89 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.85 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.12 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.02 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.19 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.81 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.24 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.42 | MC |
| SRR8240824 | leaf | wild_type | 2.57 | MC |
| SRR8240825 | leaf | wild_type | 2.47 | MC |
| SRR8240826 | leaf | wild_type | 0.78 | MC |
| SRR8240818 | leaf | wild_type | 0.97 | MC |
| SRR8240819 | leaf | wild_type | 0.80 | MC |
| SRR8240820 | leaf | wild_type | 0.54 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.25 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.67 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.92 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.34 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.16 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.00 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.79 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.78 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.39 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.90 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.29 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.10 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.07 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.51 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.53 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 4.27 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 5.90 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.53 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 4.27 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 5.90 | MC |
| SRR1761528 | leaf | drought | 4.53 | MC |
| SRR1761529 | leaf | drought | 4.27 | MC |
| SRR1761530 | leaf | control | 5.90 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.04 | MC |
| SRR6417967 | leaf | H2O_control | 2.02 | MC |
| SRR6417968 | leaf | H2O_control | 1.56 | MC |
| SRR6417969 | leaf | H2O_control | 1.78 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.38 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.35 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.30 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.63 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.66 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.58 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.57 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.22 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.74 | MC |
| SRR1213692 | leaf | wt | 3.84 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.65 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.28 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.88 | MC |
| SRR6502088 | leaf | control | 1.74 | MC |
| SRR6502089 | leaf | control | 1.92 | MC |
| SRR6502090 | leaf | control | 1.56 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.99 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.34 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.17 | MC |
| SRR6502100 | leaf | control | 2.49 | MC |
| SRR6502101 | leaf | control | 3.43 | MC |
| SRR6502102 | leaf | control | 2.64 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.85 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.27 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.33 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 1.91 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 3.66 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.61 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 5.17 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 5.17 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 4.37 | MC |
| SRR6168974 | leaf | none (control) | 4.87 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.76 | MC |
| SRR6168979 | leaf | none (control) | 0.58 | MC |
| SRR8582891 | panicle | PM | 3.47 | MC |
| SRR8582892 | panicle | PM | 2.28 | MC |
| SRR8582893 | panicle | PM | 3.38 | MC |
| SRR5110429 | panicle | Dawn | 2.26 | MC |
| SRR5110430 | panicle | Dawn | 2.19 | MC |
| SRR5110431 | panicle | Dawn | 3.20 | MC |
| SRR5110432 | panicle | Dawn | 3.63 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.94 | MC |
| SRR5110449 | panicle | Dawn + 14h | 4.57 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.15 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.23 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.45 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.38 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.15 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.02 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.16 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.35 | MC |
| SRR1633182 | panicle | WT | 0.41 | MC |
| SRR1633185 | panicle | WT | 1.03 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.47 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.87 | MC |
| SRR2154083 | seedling | wt | 3.45 | MC |
| SRR3098741 | seedling | wt | 2.57 | MC |
| SRR3098742 | seedling | wt | 1.93 | MC |
| SRR3098743 | seedling | wt | 1.82 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.26 | MC |
| SRR1944583 | seedling | no_treatment | 2.76 | MC |
| SRR358791 | seedling | wt | 2.96 | MC |
| SRR358792 | seedling | wt | 2.93 | MC |
| SRR358793 | seedling | wt | 1.10 | MC |
| SRR358794 | seedling | wt | 1.29 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.96 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.57 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.76 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.67 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.97 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.55 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.91 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.00 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.55 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.11 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.19 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.94 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 3.09 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.80 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.58 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.58 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.65 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.02 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 3.44 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.15 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.10 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.40 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.39 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.94 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.91 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.85 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.84 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.84 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.07 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.15 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.69 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.91 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.21 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 6.55 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 5.84 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 6.17 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 7.07 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 7.42 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 6.07 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 5.46 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 6.56 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 6.93 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 6.40 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 7.43 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 8.00 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 6.29 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 7.75 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 8.10 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 8.36 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 5.51 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 7.21 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 11.43 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.39 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.08 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.02 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.51 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.95 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.43 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.32 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.61 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.15 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.88 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.42 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 4.33 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.62 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.91 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.80 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.82 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.95 | MC |