| SRR4457249 | 2nd_leaf | DAH4 | 4.43 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.58 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.99 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 3.22 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.22 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.30 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 3.56 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.29 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 3.55 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 4.56 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.20 | MC |
| SRR3745125 | anther | wt | 2.86 | MC |
| SRR3745126 | anther | wt | 1.23 | MC |
| SRR3745127 | anther | wt | 1.92 | MC |
| SRR358797 | callus | wt | 6.33 | MC |
| SRR5560727 | caryopsis | wild_type | 4.01 | MC |
| SRR7265413 | coleoptile | 4dA | 4.37 | MC |
| SRR7265414 | coleoptile | 4dA | 3.58 | MC |
| SRR7265417 | coleoptile | 4dN | 3.63 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.37 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.86 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 4.19 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.65 | MC |
| SRR7265382 | embryo | 3hA | 2.56 | MC |
| SRR7265383 | embryo | 3hA | 3.56 | MC |
| SRR2338867 | endosprem | control | 1.45 | MC |
| SRR2338868 | endosprem | high_temperature | 1.90 | MC |
| SRR2338869 | endosprem | high_temperature | 1.14 | MC |
| SRR4457231 | flag_leaf | DAH4 | 3.32 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.32 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.83 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.75 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.92 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.82 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.06 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.44 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.22 | MC |
| SRR4457242 | flag_leaf | DAH28 | 3.62 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.95 | MC |
| SRR4457247 | flag_leaf | DAH44 | 4.01 | MC |
| SRR4457248 | flag_leaf | DAH44 | 5.36 | MC |
| SRR8060835 | leaf | wild_type | 1.91 | MC |
| SRR8240824 | leaf | wild_type | 0.96 | MC |
| SRR8240825 | leaf | wild_type | 0.87 | MC |
| SRR8240826 | leaf | wild_type | 0.62 | MC |
| SRR8240818 | leaf | wild_type | 1.37 | MC |
| SRR8240819 | leaf | wild_type | 0.32 | MC |
| SRR8240820 | leaf | wild_type | 0.26 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.26 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.11 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.86 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.49 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 3.50 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.49 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 3.50 | MC |
| SRR1761529 | leaf | drought | 2.49 | MC |
| SRR1761531 | leaf | control | 3.50 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.68 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.66 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.71 | MC |
| SRR6417967 | leaf | H2O_control | 3.19 | MC |
| SRR6417968 | leaf | H2O_control | 2.34 | MC |
| SRR6417969 | leaf | H2O_control | 2.22 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.56 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.08 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.72 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.35 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.52 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.42 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.18 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.24 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.08 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.10 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.45 | MC |
| SRR6502102 | leaf | control | 3.76 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.72 | MC |
| SRR6168979 | leaf | none (control) | 0.52 | MC |
| SRR6168980 | leaf | none (control) | 1.43 | MC |
| SRR6168981 | leaf | none (control) | 1.17 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.68 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.25 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.74 | MC |
| SRR4947496 | root | control | 2.06 | MC |
| SRR1633182 | panicle | WT | 2.12 | MC |
| SRR1633185 | panicle | WT | 2.43 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 3.01 | MC |
| SRR5126147 | root | "mock,1_day" | 1.61 | MC |
| SRR5126148 | root | "mock,1_day" | 1.58 | MC |
| SRR5126149 | root | "mock,1_day" | 1.92 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.42 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.02 | MC |
| SRR5126155 | root | "mock,7_days" | 3.28 | MC |
| SRR5126157 | root | "mock,7_days" | 2.94 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.24 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.87 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.51 | MC |
| SRR5126165 | root | "mock,14_days" | 1.95 | MC |
| SRR5126167 | root | "mock,14_days" | 1.96 | MC |
| SRR5126169 | root | "mock,14_days" | 2.31 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.86 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.51 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.56 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.75 | MC |
| SRR4947480 | root | control | 2.21 | MC |
| SRR4947481 | root | control | 2.84 | MC |
| SRR4947484 | root | Al | 2.21 | MC |
| SRR4947485 | root | Al | 1.85 | MC |
| SRR4947488 | root | control | 1.95 | MC |
| SRR4947489 | root | control | 2.03 | MC |
| SRR4947492 | root | Al | 2.81 | MC |
| SRR4947493 | root | Al | 2.41 | MC |
| SRR4947497 | root | control | 2.88 | MC |
| SRR4947500 | root | Al | 1.23 | MC |
| SRR4947501 | root | Al | 3.15 | MC |
| SRR4947504 | root | control | 1.00 | MC |
| SRR4947505 | root | control | 2.03 | MC |
| SRR4947508 | root | Al | 1.60 | MC |
| SRR4947509 | root | Al | 1.23 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.81 | MC |
| SRR6502093 | root | 100 mM NaCl | 5.50 | MC |
| SRR6502095 | root | control | 3.71 | MC |
| SRR6502096 | root | control | 3.43 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.15 | MC |
| SRR6502106 | root | control | 3.81 | MC |
| SRR6502108 | root | control | 3.58 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.97 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.43 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.51 | MC |
| SRR1740433 | root_elongation_zone | wt | 3.06 | MC |
| SRR3098741 | seedling | wt | 2.07 | MC |
| SRR3098742 | seedling | wt | 2.82 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.14 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.31 | MC |
| SRR358792 | seedling | wt | 7.45 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.56 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.63 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.25 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.34 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.22 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.96 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.45 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.12 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 9.58 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 10.08 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.51 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.61 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.11 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.84 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.88 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.75 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.51 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.04 | MC |