| SRR358795 | callus | wt | 9.63 | MC |
| SRR358796 | callus | wt | 9.44 | MC |
| SRR358797 | callus | wt | 7.98 | MC |
| SRR358798 | callus | wt | 6.95 | MC |
| SRR5560727 | caryopsis | wild_type | 0.51 | MC |
| SRR5560729 | caryopsis | wild_type | 0.46 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.44 | MC |
| SRR7265400 | coleoptile | 2dA | 0.30 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.11 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.34 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.74 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.08 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.82 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.82 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.76 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.43 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.68 | MC |
| SRR7265382 | embryo | 3hA | 3.62 | MC |
| SRR7265383 | embryo | 3hA | 2.62 | MC |
| SRR7265384 | embryo | 3hA | 3.19 | MC |
| SRR7265385 | embryo | 3hN | 0.45 | MC |
| SRR7265386 | embryo | 3hN | 0.52 | MC |
| SRR7265387 | embryo | 3hN | 0.37 | MC |
| SRR7265391 | embryo | 12hN | 0.47 | MC |
| SRR7265392 | embryo | 12hN | 0.44 | MC |
| SRR7265393 | embryo | 12hN | 0.78 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.56 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.44 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.77 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.58 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.08 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.23 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.01 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.33 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.27 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.49 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.29 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.74 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.88 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.04 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.41 | MC |
| SRR6417967 | leaf | H2O_control | 0.72 | MC |
| SRR6417968 | leaf | H2O_control | 0.70 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.01 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.22 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.40 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.01 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.70 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.72 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.36 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.22 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.21 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.99 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.83 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.73 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.29 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.38 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.46 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.87 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.24 | MC |
| SRR6502089 | leaf | control | 0.49 | MC |
| SRR6502090 | leaf | control | 0.38 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.86 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.56 | MC |
| SRR5856927 | leaf | control | 2.02 | MC |
| SRR5856928 | leaf | control | 1.77 | MC |
| SRR5856929 | leaf | control | 1.22 | MC |
| SRR5856933 | leaf | control | 0.93 | MC |
| SRR5856934 | leaf | control | 2.22 | MC |
| SRR5856935 | leaf | control | 2.32 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 4.86 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 5.19 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 4.28 | MC |
| SRR6168973 | leaf | none (control) | 1.02 | MC |
| SRR6168974 | leaf | none (control) | 1.35 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.84 | MC |
| SRR8582890 | panicle | AM | 0.23 | MC |
| SRR8582893 | panicle | PM | 0.52 | MC |
| SRR5110429 | panicle | Dawn | 1.40 | MC |
| SRR5110430 | panicle | Dawn | 0.65 | MC |
| SRR5110431 | panicle | Dawn | 1.04 | MC |
| SRR5110432 | panicle | Dawn | 0.40 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.36 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.56 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.82 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.00 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.49 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.17 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 4.84 | MC |
| SRR5110445 | panicle | Dusk | 3.54 | MC |
| SRR5110446 | panicle | Dusk | 1.75 | MC |
| SRR5110447 | panicle | Dusk | 2.07 | MC |
| SRR5110448 | panicle | Dusk | 3.97 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.41 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.43 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.14 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.37 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.81 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.67 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.10 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.96 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.38 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.58 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.83 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.52 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.75 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.32 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.75 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 4.67 | MC |
| SRR5126149 | root | "mock,1_day" | 2.41 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.09 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.26 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.34 | MC |
| SRR5126153 | root | "mock,7_days" | 0.69 | MC |
| SRR5126155 | root | "mock,7_days" | 1.71 | MC |
| SRR5126157 | root | "mock,7_days" | 4.95 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.87 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.50 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.50 | MC |
| SRR5126165 | root | "mock,14_days" | 2.31 | MC |
| SRR5126167 | root | "mock,14_days" | 2.30 | MC |
| SRR5126169 | root | "mock,14_days" | 1.01 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.63 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.11 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.37 | MC |
| SRR1213694 | root | wt | 0.22 | MC |
| SRR1213695 | root | wt | 0.19 | MC |
| SRR4947479 | root | control | 0.45 | MC |
| SRR4947482 | root | Al | 0.71 | MC |
| SRR4947483 | root | Al | 0.56 | MC |
| SRR4947490 | root | Al | 1.38 | MC |
| SRR4947494 | root | control | 0.73 | MC |
| SRR4947497 | root | control | 4.03 | MC |
| SRR4947499 | root | Al | 0.52 | MC |
| SRR4947501 | root | Al | 2.74 | MC |
| SRR4947503 | root | control | 0.61 | MC |
| SRR4947506 | root | Al | 1.15 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.87 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.35 | MC |
| SRR6502093 | root | 100 mM NaCl | 5.63 | MC |
| SRR6502094 | root | control | 2.11 | MC |
| SRR6502095 | root | control | 2.18 | MC |
| SRR6502096 | root | control | 2.33 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.49 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.47 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.29 | MC |
| SRR6502106 | root | control | 1.36 | MC |
| SRR6502107 | root | control | 2.26 | MC |
| SRR6502108 | root | control | 2.09 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.21 | MC |
| SRR6441554 | seedling | wild_type | 0.36 | MC |
| SRR2154086 | seedling | wt | 2.33 | MC |
| SRR2154082 | seedling | wt | 1.40 | MC |
| SRR2154083 | seedling | wt | 2.17 | MC |
| SRR2154084 | seedling | wt | 1.51 | MC |
| SRR2154085 | seedling | wt | 2.27 | MC |
| SRR2154087 | seedling | wt | 2.14 | MC |
| SRR3098741 | seedling | wt | 0.19 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.72 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.31 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.71 | MC |
| SRR358791 | seedling | wt | 0.99 | MC |
| SRR358792 | seedling | wt | 1.08 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.74 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.62 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.78 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.93 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.58 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.30 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.07 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.00 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.62 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.63 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.25 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.18 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.24 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.68 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.40 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.68 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.44 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.45 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.28 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.50 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.32 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.27 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.70 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 0.99 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.09 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.26 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.44 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.84 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.63 | MC |