| SRR4457250 | 2nd_leaf | DAH4 | 0.82 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.74 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.57 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.44 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.50 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.83 | MC |
| SRR3745126 | anther | wt | 0.56 | MC |
| SRR358795 | callus | wt | 3.66 | MC |
| SRR358796 | callus | wt | 3.11 | MC |
| SRR358797 | callus | wt | 2.24 | MC |
| SRR358798 | callus | wt | 0.94 | MC |
| SRR5560727 | caryopsis | wild_type | 4.33 | MC |
| SRR5560728 | caryopsis | wild_type | 1.02 | MC |
| SRR5560729 | caryopsis | wild_type | 0.90 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.73 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.59 | MC |
| SRR7265400 | coleoptile | 2dA | 0.34 | MC |
| SRR7265401 | coleoptile | 2dA | 0.42 | MC |
| SRR7265402 | coleoptile | 2dA | 0.38 | MC |
| SRR7265403 | coleoptile | 2dN | 0.33 | MC |
| SRR7265404 | coleoptile | 2dN | 0.51 | MC |
| SRR7265414 | coleoptile | 4dA | 0.54 | MC |
| SRR7265416 | coleoptile | 4dN | 0.49 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.61 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.30 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.44 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.30 | MC |
| SRR7265378 | embryo | 1hA | 0.23 | MC |
| SRR7265379 | embryo | 1hN | 0.40 | MC |
| SRR7265381 | embryo | 1hN | 0.24 | MC |
| SRR7265388 | embryo | 12hA | 0.48 | MC |
| SRR7265390 | embryo | 12hA | 0.43 | MC |
| SRR7265391 | embryo | 12hN | 0.99 | MC |
| SRR7265393 | embryo | 12hN | 0.75 | MC |
| SRR7265395 | embryo | 24hA | 0.51 | MC |
| SRR7265397 | embryo | 24hN | 0.92 | MC |
| SRR7265398 | embryo | 24hN | 0.78 | MC |
| SRR7265399 | embryo | 24hN | 0.80 | MC |
| SRR2338867 | endosprem | control | 0.41 | MC |
| SRR976168 | flag_leaf | wild_type | 2.22 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.67 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.61 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.26 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.25 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.40 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.26 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.44 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.52 | MC |
| SRR1213691 | flower | wt | 1.03 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.44 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.54 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.51 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.75 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.42 | MC |
| SRR504365 | leaf | wt | 0.31 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.24 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.67 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.47 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.36 | MC |
| SRR1213693 | leaf | wt | 0.53 | MC |
| SRR6168975 | leaf | none (control) | 2.81 | MC |
| SRR6168979 | leaf | none (control) | 0.46 | MC |
| SRR6168980 | leaf | none (control) | 1.14 | MC |
| SRR8582891 | panicle | PM | 0.73 | MC |
| SRR8582893 | panicle | PM | 0.46 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.57 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.27 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.65 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.25 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.83 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.22 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.88 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.10 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.82 | MC |
| SRR5126153 | root | "mock,7_days" | 0.41 | MC |
| SRR5126155 | root | "mock,7_days" | 0.42 | MC |
| SRR5126157 | root | "mock,7_days" | 1.06 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.43 | MC |
| SRR5126167 | root | "mock,14_days" | 0.42 | MC |
| SRR5126169 | root | "mock,14_days" | 0.44 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.96 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.80 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.51 | MC |
| SRR1213695 | root | wt | 0.13 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.85 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.36 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.64 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.46 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.38 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.70 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.73 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.20 | MC |
| SRR2154086 | seedling | wt | 0.57 | MC |
| SRR3098741 | seedling | wt | 0.30 | MC |
| SRR3098742 | seedling | wt | 0.28 | MC |
| SRR3098743 | seedling | wt | 0.58 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.64 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.90 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.08 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.32 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.30 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.76 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.94 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.60 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.53 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.35 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.09 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.38 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.80 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.77 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.13 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.74 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.76 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.71 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.48 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.93 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.74 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 0.96 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.42 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.04 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.34 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 5.15 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 4.81 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.45 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.86 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.12 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.58 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.12 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.64 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.44 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.45 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.65 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.57 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.06 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.35 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.54 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.72 | MC |