| SRR4457264 | 2nd_leaf | DAH44 | 5.89 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.99 | MC |
| SRR3745125 | anther | wt | 0.92 | MC |
| SRR358796 | callus | wt | 7.35 | MC |
| SRR358798 | callus | wt | 8.96 | MC |
| SRR5560729 | caryopsis | wild_type | 5.11 | MC |
| SRR4947495 | root | control | 2.50 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.03 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.95 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.56 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.60 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.72 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 3.34 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.80 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.36 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.62 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.12 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 3.79 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.53 | MC |
| SRR2338866 | endosprem | control | 1.41 | MC |
| SRR2338867 | endosprem | control | 0.72 | MC |
| SRR2338868 | endosprem | high_temperature | 1.50 | MC |
| SRR2338869 | endosprem | high_temperature | 2.67 | MC |
| SRR976168 | flag_leaf | wild_type | 1.46 | MC |
| SRR4457247 | flag_leaf | DAH44 | 5.04 | MC |
| SRR4457248 | flag_leaf | DAH44 | 5.36 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.64 | MC |
| SRR8240824 | leaf | wild_type | 0.72 | MC |
| SRR8240825 | leaf | wild_type | 0.99 | MC |
| SRR8240826 | leaf | wild_type | 0.93 | MC |
| SRR8240818 | leaf | wild_type | 1.17 | MC |
| SRR8240819 | leaf | wild_type | 1.56 | MC |
| SRR8240820 | leaf | wild_type | 2.01 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.91 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.72 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.06 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.39 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.17 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.25 | MC |
| SRR6417967 | leaf | H2O_control | 3.24 | MC |
| SRR6417968 | leaf | H2O_control | 3.42 | MC |
| SRR5856927 | leaf | control | 1.20 | MC |
| SRR5856928 | leaf | control | 1.70 | MC |
| SRR5856930 | leaf | salt | 1.34 | MC |
| SRR5856931 | leaf | salt | 1.53 | MC |
| SRR5856932 | leaf | salt | 1.10 | MC |
| SRR5856933 | leaf | control | 2.22 | MC |
| SRR5856934 | leaf | control | 1.75 | MC |
| SRR5856935 | leaf | control | 1.66 | MC |
| SRR5856936 | leaf | salt | 1.73 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.26 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 4.67 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.67 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 3.23 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.12 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.35 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.12 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.55 | MC |
| SRR6168973 | leaf | none (control) | 3.68 | MC |
| SRR6168974 | leaf | none (control) | 3.06 | MC |
| SRR6168975 | leaf | none (control) | 3.27 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.88 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 5.30 | MC |
| SRR6168979 | leaf | none (control) | 0.47 | MC |
| SRR6168980 | leaf | none (control) | 1.26 | MC |
| SRR5110429 | panicle | Dawn | 4.06 | MC |
| SRR5110430 | panicle | Dawn | 3.05 | MC |
| SRR5110431 | panicle | Dawn | 2.69 | MC |
| SRR5110432 | panicle | Dawn | 2.16 | MC |
| SRR4947496 | root | control | 3.75 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.96 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.34 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.60 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.66 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.62 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.43 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.73 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.29 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.43 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.77 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.87 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.11 | MC |
| SRR5110445 | panicle | Dusk | 2.29 | MC |
| SRR5110446 | panicle | Dusk | 3.02 | MC |
| SRR5110447 | panicle | Dusk | 2.47 | MC |
| SRR5110448 | panicle | Dusk | 3.19 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.83 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.95 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.96 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.71 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.10 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.40 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.08 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.87 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.32 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.73 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.58 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.32 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.97 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 6.37 | MC |
| SRR5126148 | root | "mock,1_day" | 2.90 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.20 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.57 | MC |
| SRR4947478 | root | control | 2.21 | MC |
| SRR4947479 | root | control | 2.35 | MC |
| SRR4947480 | root | control | 4.15 | MC |
| SRR4947482 | root | Al | 2.70 | MC |
| SRR4947483 | root | Al | 1.72 | MC |
| SRR4947484 | root | Al | 3.66 | MC |
| SRR4947485 | root | Al | 4.25 | MC |
| SRR4947487 | root | control | 2.23 | MC |
| SRR4947488 | root | control | 3.71 | MC |
| SRR4947489 | root | control | 3.62 | MC |
| SRR4947490 | root | Al | 1.75 | MC |
| SRR4947491 | root | Al | 2.63 | MC |
| SRR4947492 | root | Al | 3.95 | MC |
| SRR4947493 | root | Al | 2.88 | MC |
| SRR4947494 | root | control | 1.91 | MC |
| SRR4947497 | root | control | 3.97 | MC |
| SRR4947498 | root | Al | 2.18 | MC |
| SRR4947499 | root | Al | 2.55 | MC |
| SRR4947500 | root | Al | 3.86 | MC |
| SRR4947501 | root | Al | 4.96 | MC |
| SRR4947502 | root | control | 3.00 | MC |
| SRR4947503 | root | control | 2.57 | MC |
| SRR4947504 | root | control | 4.84 | MC |
| SRR4947505 | root | control | 5.46 | MC |
| SRR4947506 | root | Al | 1.73 | MC |
| SRR4947507 | root | Al | 2.09 | MC |
| SRR4947508 | root | Al | 3.21 | MC |
| SRR4947509 | root | Al | 4.58 | MC |
| SRR6502094 | root | control | 4.15 | MC |
| SRR6502095 | root | control | 4.30 | MC |
| SRR6502096 | root | control | 3.61 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.39 | MC |
| SRR6502105 | root | 100 mM NaCl | 4.28 | MC |
| SRR6502106 | root | control | 3.15 | MC |
| SRR6502107 | root | control | 3.64 | MC |
| SRR6502108 | root | control | 3.74 | MC |
| SRR1740434 | root_differentiation_zone | wt | 3.32 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.20 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.92 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.00 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.14 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.59 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.89 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.43 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.66 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 4.48 | MC |
| SRR358791 | seedling | wt | 7.28 | MC |
| SRR358792 | seedling | wt | 7.69 | MC |
| SRR358793 | seedling | wt | 3.51 | MC |
| SRR358794 | seedling | wt | 4.27 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.69 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.38 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.42 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.03 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.14 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.68 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.39 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.82 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.44 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.85 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.64 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.02 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.78 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.64 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.93 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.95 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 3.10 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.29 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.95 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 5.38 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.06 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 5.87 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.88 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 6.82 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.50 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.38 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.85 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.00 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.87 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.45 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.74 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 5.52 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.97 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 4.46 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.11 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.42 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.42 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 4.56 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 5.07 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.34 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.58 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 4.67 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 4.26 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 8.16 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 5.45 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.34 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.30 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.93 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.86 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.22 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.35 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.88 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.56 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.81 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.12 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.17 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.72 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 3.40 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.00 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.70 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.18 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.01 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.60 | MC |