| SRR3745125 | anther | wt | 1.30 | MC |
| SRR3745126 | anther | wt | 3.10 | MC |
| SRR3745127 | anther | wt | 4.62 | MC |
| SRR358796 | callus | wt | 1.92 | MC |
| SRR6320473 | carpel | wt | 4.50 | MC |
| SRR6320498 | carpel | wt | 4.43 | MC |
| SRR5560727 | caryopsis | wild_type | 1.00 | MC |
| SRR5560728 | caryopsis | wild_type | 1.74 | MC |
| SRR5560729 | caryopsis | wild_type | 3.85 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.21 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.08 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.21 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.07 | MC |
| SRR7265400 | coleoptile | 2dA | 0.54 | MC |
| SRR7265401 | coleoptile | 2dA | 0.53 | MC |
| SRR7265402 | coleoptile | 2dA | 0.95 | MC |
| SRR7265403 | coleoptile | 2dN | 0.38 | MC |
| SRR7265404 | coleoptile | 2dN | 0.63 | MC |
| SRR7265405 | coleoptile | 2dN | 0.60 | MC |
| SRR7265406 | coleoptile | 3dA | 0.45 | MC |
| SRR7265407 | coleoptile | 3dA | 0.68 | MC |
| SRR7265409 | coleoptile | 3dN | 0.43 | MC |
| SRR7265410 | coleoptile | 3dN | 0.58 | MC |
| SRR7265411 | coleoptile | 3dN | 0.62 | MC |
| SRR7265413 | coleoptile | 4dA | 1.06 | MC |
| SRR7265414 | coleoptile | 4dA | 0.66 | MC |
| SRR7265417 | coleoptile | 4dN | 0.72 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.17 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.56 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.83 | MC |
| SRR7265382 | embryo | 3hA | 3.36 | MC |
| SRR7265383 | embryo | 3hA | 2.82 | MC |
| SRR7265384 | embryo | 3hA | 2.22 | MC |
| SRR7265385 | embryo | 3hN | 2.51 | MC |
| SRR7265386 | embryo | 3hN | 2.72 | MC |
| SRR7265387 | embryo | 3hN | 2.73 | MC |
| SRR7265388 | embryo | 12hA | 0.61 | MC |
| SRR7265389 | embryo | 12hA | 0.44 | MC |
| SRR7265390 | embryo | 12hA | 0.37 | MC |
| SRR7265391 | embryo | 12hN | 0.47 | MC |
| SRR7265393 | embryo | 12hN | 0.50 | MC |
| SRR7265398 | embryo | 24hN | 0.98 | MC |
| SRR7265399 | embryo | 24hN | 0.80 | MC |
| SRR2338868 | endosprem | high_temperature | 1.07 | MC |
| SRR2338869 | endosprem | high_temperature | 0.69 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.52 | MC |
| SRR8060835 | leaf | wild_type | 0.36 | MC |
| SRR8060837 | leaf | wild_type | 0.29 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.89 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.81 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.33 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.39 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.30 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.31 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.35 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.27 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.41 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.34 | MC |
| SRR1213692 | leaf | wt | 0.29 | MC |
| SRR5856927 | leaf | control | 1.36 | MC |
| SRR5856928 | leaf | control | 0.61 | MC |
| SRR5856929 | leaf | control | 0.53 | MC |
| SRR5856930 | leaf | salt | 0.21 | MC |
| SRR5856931 | leaf | salt | 0.35 | MC |
| SRR5856933 | leaf | control | 2.38 | MC |
| SRR5856934 | leaf | control | 1.18 | MC |
| SRR5856935 | leaf | control | 2.23 | MC |
| SRR5856936 | leaf | salt | 0.66 | MC |
| SRR5856937 | leaf | salt | 0.37 | MC |
| SRR5856938 | leaf | salt | 0.52 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.90 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.31 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.29 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.53 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 0.98 | MC |
| SRR6168973 | leaf | none (control) | 2.07 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.39 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.89 | MC |
| SRR4947496 | root | control | 1.95 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.56 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.34 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 4.03 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.60 | MC |
| SRR5110439 | panicle | Dawn + 7h | 4.66 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.65 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.62 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.89 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.65 | MC |
| SRR5110448 | panicle | Dusk | 5.40 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.67 | MC |
| SRR5110457 | panicle | Dawn + 21h | 3.37 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.79 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.63 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.51 | MC |
| SRR1633182 | panicle | WT | 3.00 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.68 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.98 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.15 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.47 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.07 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.46 | MC |
| SRR5126147 | root | "mock,1_day" | 2.53 | MC |
| SRR5126148 | root | "mock,1_day" | 2.09 | MC |
| SRR5126149 | root | "mock,1_day" | 1.88 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.32 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.37 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.57 | MC |
| SRR5126153 | root | "mock,7_days" | 2.49 | MC |
| SRR5126155 | root | "mock,7_days" | 3.88 | MC |
| SRR5126157 | root | "mock,7_days" | 1.06 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.71 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.34 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.38 | MC |
| SRR5126165 | root | "mock,14_days" | 2.53 | MC |
| SRR5126167 | root | "mock,14_days" | 1.74 | MC |
| SRR5126169 | root | "mock,14_days" | 2.33 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.83 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.30 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.70 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.59 | MC |
| SRR4947478 | root | control | 2.98 | MC |
| SRR4947479 | root | control | 3.17 | MC |
| SRR4947480 | root | control | 2.18 | MC |
| SRR4947481 | root | control | 2.23 | MC |
| SRR4947482 | root | Al | 3.01 | MC |
| SRR4947483 | root | Al | 3.60 | MC |
| SRR4947484 | root | Al | 1.81 | MC |
| SRR4947485 | root | Al | 2.58 | MC |
| SRR4947487 | root | control | 2.76 | MC |
| SRR4947488 | root | control | 2.36 | MC |
| SRR4947489 | root | control | 1.24 | MC |
| SRR4947490 | root | Al | 2.75 | MC |
| SRR4947491 | root | Al | 5.39 | MC |
| SRR4947492 | root | Al | 2.89 | MC |
| SRR4947493 | root | Al | 2.17 | MC |
| SRR4947494 | root | control | 3.61 | MC |
| SRR4947500 | root | Al | 3.02 | MC |
| SRR4947503 | root | control | 2.12 | MC |
| SRR4947504 | root | control | 2.46 | MC |
| SRR4947505 | root | control | 1.49 | MC |
| SRR4947506 | root | Al | 2.56 | MC |
| SRR4947507 | root | Al | 5.54 | MC |
| SRR4947508 | root | Al | 3.41 | MC |
| SRR4947509 | root | Al | 2.25 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.06 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.93 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.78 | MC |
| SRR6502095 | root | control | 0.45 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.79 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.48 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.03 | MC |
| SRR6502106 | root | control | 1.11 | MC |
| SRR6502107 | root | control | 0.65 | MC |
| SRR6502108 | root | control | 1.88 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.68 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.48 | MC |
| SRR6441554 | seedling | wild_type | 0.62 | MC |
| SRR2154086 | seedling | wt | 3.73 | MC |
| SRR2154085 | seedling | wt | 3.24 | MC |
| SRR2154087 | seedling | wt | 4.03 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.60 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.44 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.76 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.87 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 3.90 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 5.82 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.43 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.87 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.81 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.01 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.98 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.51 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.58 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.36 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.80 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.08 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.53 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.14 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.42 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.79 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.01 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.03 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 5.35 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 5.05 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.90 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.78 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.95 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 3.39 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.77 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.45 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.87 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.55 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.99 | MC |