| SRR4457251 | 2nd_leaf | DAH4 | 0.28 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.33 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.34 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.24 | MC |
| SRR358795 | callus | wt | 2.63 | MC |
| SRR358796 | callus | wt | 1.82 | MC |
| SRR358797 | callus | wt | 2.08 | MC |
| SRR358798 | callus | wt | 2.44 | MC |
| SRR5560727 | caryopsis | wild_type | 0.27 | MC |
| SRR5560728 | caryopsis | wild_type | 0.45 | MC |
| SRR5560729 | caryopsis | wild_type | 0.64 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.12 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.64 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.69 | MC |
| SRR4947495 | root | control | 1.08 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.85 | MC |
| SRR7265412 | coleoptile | 4dA | 2.62 | MC |
| SRR7265414 | coleoptile | 4dA | 4.12 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.66 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.04 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.42 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.97 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.40 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.18 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.26 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.41 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.37 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.28 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.36 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.41 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.33 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.49 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.52 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.63 | MC |
| SRR1213691 | flower | wt | 0.66 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.42 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.34 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.98 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.66 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.71 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.38 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.32 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.17 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.77 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.45 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.21 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.66 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.41 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.42 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.45 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.74 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.63 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.35 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.62 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.62 | MC |
| SRR1761530 | leaf | control | 0.62 | MC |
| SRR504365 | leaf | wt | 0.59 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.35 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.29 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.54 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.47 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.34 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.47 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.46 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.55 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.34 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.24 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.25 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.64 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.68 | MC |
| SRR1213693 | leaf | wt | 0.28 | MC |
| SRR6168979 | leaf | none (control) | 0.21 | MC |
| SRR6168980 | leaf | none (control) | 0.38 | MC |
| SRR6168981 | leaf | none (control) | 2.23 | MC |
| SRR8582888 | panicle | AM | 0.33 | MC |
| SRR8582889 | panicle | AM | 0.20 | MC |
| SRR8582890 | panicle | AM | 0.82 | MC |
| SRR8582892 | panicle | PM | 0.70 | MC |
| SRR8582893 | panicle | PM | 0.28 | MC |
| SRR5110429 | panicle | Dawn | 0.44 | MC |
| SRR5110448 | panicle | Dusk | 0.54 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.61 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.41 | MC |
| SRR1633182 | panicle | WT | 0.69 | MC |
| SRR1633185 | panicle | WT | 1.14 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.24 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.72 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.68 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.56 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.02 | MC |
| SRR5126147 | root | "mock,1_day" | 2.17 | MC |
| SRR5126148 | root | "mock,1_day" | 3.03 | MC |
| SRR5126149 | root | "mock,1_day" | 2.57 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.92 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.79 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.13 | MC |
| SRR5126153 | root | "mock,7_days" | 3.32 | MC |
| SRR5126155 | root | "mock,7_days" | 3.90 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.55 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.28 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.06 | MC |
| SRR5126165 | root | "mock,14_days" | 3.70 | MC |
| SRR5126167 | root | "mock,14_days" | 1.65 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.17 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.85 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.39 | MC |
| SRR1213694 | root | wt | 0.48 | MC |
| SRR1213695 | root | wt | 0.26 | MC |
| SRR4947479 | root | control | 0.45 | MC |
| SRR4947482 | root | Al | 0.46 | MC |
| SRR4947490 | root | Al | 0.82 | MC |
| SRR4947491 | root | Al | 0.65 | MC |
| SRR4947494 | root | control | 0.99 | MC |
| SRR4947498 | root | Al | 1.14 | MC |
| SRR4947499 | root | Al | 1.05 | MC |
| SRR4947502 | root | control | 1.55 | MC |
| SRR4947503 | root | control | 0.48 | MC |
| SRR4947506 | root | Al | 0.55 | MC |
| SRR4947507 | root | Al | 1.01 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.81 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.47 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.48 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.81 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.84 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.43 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.55 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.64 | MC |
| SRR6441554 | seedling | wild_type | 0.34 | MC |
| SRR6441555 | seedling | wild_type | 0.25 | MC |
| SRR2154086 | seedling | wt | 1.14 | MC |
| SRR2154082 | seedling | wt | 0.30 | MC |
| SRR2154084 | seedling | wt | 0.68 | MC |
| SRR2154085 | seedling | wt | 0.50 | MC |
| SRR2154087 | seedling | wt | 0.92 | MC |
| SRR3098741 | seedling | wt | 0.34 | MC |
| SRR3098742 | seedling | wt | 0.29 | MC |
| SRR3098743 | seedling | wt | 0.31 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.91 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.05 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.64 | MC |
| SRR358791 | seedling | wt | 0.86 | MC |
| SRR358792 | seedling | wt | 0.97 | MC |
| SRR358793 | seedling | wt | 0.50 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.25 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.53 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 3.70 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.85 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.58 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.24 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.59 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.11 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.22 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.18 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.23 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.22 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.34 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.45 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.48 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.43 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.39 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.37 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.57 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.52 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.35 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.37 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.47 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.25 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.87 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.24 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.55 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.59 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.30 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.30 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.44 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.17 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.05 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.03 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.67 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.51 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.39 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.18 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.72 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.27 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.24 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.70 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.72 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.18 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.10 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.03 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.62 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.00 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.32 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.40 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.34 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.79 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.53 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.37 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.86 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.47 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.75 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.46 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.68 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.64 | MC |