| SRR4457259 | 2nd_leaf | DAH28 | 3.08 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.10 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.36 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.64 | MC |
| SRR3745125 | anther | wt | 2.23 | MC |
| SRR3745126 | anther | wt | 1.49 | MC |
| SRR3745127 | anther | wt | 1.90 | MC |
| SRR4947495 | root | control | 2.28 | MC |
| SRR7265400 | coleoptile | 2dA | 0.99 | MC |
| SRR7265401 | coleoptile | 2dA | 0.68 | MC |
| SRR7265402 | coleoptile | 2dA | 0.97 | MC |
| SRR7265403 | coleoptile | 2dN | 2.04 | MC |
| SRR7265404 | coleoptile | 2dN | 1.55 | MC |
| SRR7265405 | coleoptile | 2dN | 1.55 | MC |
| SRR7265409 | coleoptile | 3dN | 1.58 | MC |
| SRR7265410 | coleoptile | 3dN | 1.15 | MC |
| SRR7265411 | coleoptile | 3dN | 1.59 | MC |
| SRR7265415 | coleoptile | 4dN | 2.25 | MC |
| SRR7265416 | coleoptile | 4dN | 3.95 | MC |
| SRR7265417 | coleoptile | 4dN | 2.55 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.08 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.75 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.09 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.75 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 3.72 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.24 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.16 | MC |
| SRR7265389 | embryo | 12hA | 4.23 | MC |
| SRR7265391 | embryo | 12hN | 4.70 | MC |
| SRR7265393 | embryo | 12hN | 3.90 | MC |
| SRR7265394 | embryo | 24hA | 0.62 | MC |
| SRR7265395 | embryo | 24hA | 1.55 | MC |
| SRR7265396 | embryo | 24hA | 0.97 | MC |
| SRR7265397 | embryo | 24hN | 1.49 | MC |
| SRR7265398 | embryo | 24hN | 1.58 | MC |
| SRR7265399 | embryo | 24hN | 1.69 | MC |
| SRR976168 | flag_leaf | wild_type | 2.30 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.78 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.00 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.68 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.80 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.96 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.90 | MC |
| SRR8060835 | leaf | wild_type | 1.84 | MC |
| SRR8060836 | leaf | wild_type | 2.87 | MC |
| SRR8060837 | leaf | wild_type | 2.05 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.34 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.56 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.29 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.82 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.99 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.96 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.39 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.77 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.19 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.40 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.56 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.27 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 4.83 | MC |
| SRR504365 | leaf | wt | 1.34 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.83 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.97 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.34 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.36 | MC |
| SRR1213692 | leaf | wt | 0.90 | MC |
| SRR1213693 | leaf | wt | 0.99 | MC |
| SRR6502088 | leaf | control | 2.12 | MC |
| SRR6502089 | leaf | control | 4.23 | MC |
| SRR6502090 | leaf | control | 2.89 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.92 | MC |
| SRR6502100 | leaf | control | 3.20 | MC |
| SRR6502101 | leaf | control | 2.92 | MC |
| SRR6502102 | leaf | control | 2.37 | MC |
| SRR6168973 | leaf | none (control) | 2.69 | MC |
| SRR6168974 | leaf | none (control) | 4.07 | MC |
| SRR6168975 | leaf | none (control) | 5.14 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 6.36 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.17 | MC |
| SRR8582891 | panicle | PM | 1.19 | MC |
| SRR8582892 | panicle | PM | 1.41 | MC |
| SRR8582893 | panicle | PM | 2.11 | MC |
| SRR4947496 | root | control | 1.86 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.78 | MC |
| SRR5110440 | panicle | Dawn + 7h | 5.18 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.48 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.16 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.34 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 4.57 | MC |
| SRR5110445 | panicle | Dusk | 1.41 | MC |
| SRR5110446 | panicle | Dusk | 2.12 | MC |
| SRR5110447 | panicle | Dusk | 1.63 | MC |
| SRR5110448 | panicle | Dusk | 4.72 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.79 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.57 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.60 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.27 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.61 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.09 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.81 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.59 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.75 | MC |
| SRR1633182 | panicle | WT | 1.70 | MC |
| SRR1633185 | panicle | WT | 2.04 | MC |
| SRR5126147 | root | "mock,1_day" | 2.62 | MC |
| SRR5126148 | root | "mock,1_day" | 0.78 | MC |
| SRR5126149 | root | "mock,1_day" | 2.36 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.73 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.68 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.79 | MC |
| SRR5126153 | root | "mock,7_days" | 1.04 | MC |
| SRR5126155 | root | "mock,7_days" | 2.88 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.55 | MC |
| SRR5126165 | root | "mock,14_days" | 0.35 | MC |
| SRR5126169 | root | "mock,14_days" | 3.82 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.83 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 5.08 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.43 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.37 | MC |
| SRR1213695 | root | wt | 1.80 | MC |
| SRR4947478 | root | control | 1.58 | MC |
| SRR4947480 | root | control | 2.29 | MC |
| SRR4947481 | root | control | 1.53 | MC |
| SRR4947482 | root | Al | 0.89 | MC |
| SRR4947483 | root | Al | 0.59 | MC |
| SRR4947484 | root | Al | 0.80 | MC |
| SRR4947485 | root | Al | 0.50 | MC |
| SRR4947487 | root | control | 1.86 | MC |
| SRR4947488 | root | control | 1.45 | MC |
| SRR4947489 | root | control | 2.16 | MC |
| SRR4947490 | root | Al | 1.66 | MC |
| SRR4947491 | root | Al | 2.10 | MC |
| SRR4947492 | root | Al | 1.80 | MC |
| SRR4947493 | root | Al | 0.71 | MC |
| SRR4947494 | root | control | 1.27 | MC |
| SRR4947497 | root | control | 2.56 | MC |
| SRR4947498 | root | Al | 1.17 | MC |
| SRR4947499 | root | Al | 1.29 | MC |
| SRR4947500 | root | Al | 1.13 | MC |
| SRR4947501 | root | Al | 1.60 | MC |
| SRR4947502 | root | control | 2.97 | MC |
| SRR4947503 | root | control | 1.81 | MC |
| SRR4947504 | root | control | 2.26 | MC |
| SRR4947505 | root | control | 3.78 | MC |
| SRR4947506 | root | Al | 1.31 | MC |
| SRR4947507 | root | Al | 1.28 | MC |
| SRR4947508 | root | Al | 0.56 | MC |
| SRR4947509 | root | Al | 0.73 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.65 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.68 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.17 | MC |
| SRR6502094 | root | control | 1.50 | MC |
| SRR6502095 | root | control | 1.46 | MC |
| SRR6502096 | root | control | 1.22 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.81 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.18 | MC |
| SRR6502105 | root | 100 mM NaCl | 4.42 | MC |
| SRR6502106 | root | control | 1.69 | MC |
| SRR6502107 | root | control | 0.95 | MC |
| SRR6502108 | root | control | 1.43 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.72 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.27 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.60 | MC |
| SRR6441554 | seedling | wild_type | 2.06 | MC |
| SRR2154086 | seedling | wt | 2.84 | MC |
| SRR2154082 | seedling | wt | 2.98 | MC |
| SRR2154083 | seedling | wt | 2.48 | MC |
| SRR2154084 | seedling | wt | 2.21 | MC |
| SRR2154085 | seedling | wt | 3.68 | MC |
| SRR2154087 | seedling | wt | 3.60 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.02 | MC |
| SRR1944583 | seedling | no_treatment | 2.53 | MC |
| SRR358793 | seedling | wt | 1.52 | MC |
| SRR358794 | seedling | wt | 3.46 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.06 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.81 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.79 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.30 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.82 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.06 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.33 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.85 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.57 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 5.42 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 6.60 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 7.18 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.43 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.76 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.58 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 7.15 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 8.78 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 9.22 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 14.25 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.27 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.13 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.30 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.94 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.57 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.05 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.29 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.38 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.29 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.84 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.28 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.71 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.99 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.34 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.16 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.61 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.38 | MC |