| SRR4457250 | 2nd_leaf | DAH4 | 0.63 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.41 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.38 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.28 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.53 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.36 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.56 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.75 | MC |
| SRR3745125 | anther | wt | 2.11 | MC |
| SRR3745126 | anther | wt | 3.93 | MC |
| SRR3745127 | anther | wt | 4.82 | MC |
| SRR358795 | callus | wt | 8.34 | MC |
| SRR358796 | callus | wt | 9.00 | MC |
| SRR358797 | callus | wt | 8.89 | MC |
| SRR6320498 | carpel | wt | 2.65 | MC |
| SRR5560727 | caryopsis | wild_type | 4.22 | MC |
| SRR7265408 | coleoptile | 3dA | 2.55 | MC |
| SRR7265412 | coleoptile | 4dA | 1.30 | MC |
| SRR7265413 | coleoptile | 4dA | 2.55 | MC |
| SRR7265414 | coleoptile | 4dA | 2.30 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.46 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.35 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.37 | MC |
| SRR7265376 | embryo | 1hA | 1.97 | MC |
| SRR7265377 | embryo | 1hA | 3.15 | MC |
| SRR7265378 | embryo | 1hA | 2.71 | MC |
| SRR7265379 | embryo | 1hN | 2.53 | MC |
| SRR7265380 | embryo | 1hN | 1.67 | MC |
| SRR7265382 | embryo | 3hA | 2.52 | MC |
| SRR7265383 | embryo | 3hA | 2.23 | MC |
| SRR7265384 | embryo | 3hA | 3.36 | MC |
| SRR7265385 | embryo | 3hN | 3.81 | MC |
| SRR7265387 | embryo | 3hN | 2.35 | MC |
| SRR2338868 | endosprem | high_temperature | 1.96 | MC |
| SRR976168 | flag_leaf | wild_type | 1.04 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.40 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.39 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.31 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.58 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.38 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.46 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.69 | MC |
| SRR8060835 | leaf | wild_type | 1.88 | MC |
| SRR8060836 | leaf | wild_type | 2.72 | MC |
| SRR8060837 | leaf | wild_type | 1.50 | MC |
| SRR8240824 | leaf | wild_type | 2.21 | MC |
| SRR8240825 | leaf | wild_type | 1.70 | MC |
| SRR8240826 | leaf | wild_type | 1.74 | MC |
| SRR8240818 | leaf | wild_type | 0.50 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.45 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.21 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.27 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.94 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.74 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.87 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.14 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.18 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.50 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.61 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.19 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.27 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.20 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.56 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.19 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.88 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.94 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.07 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.78 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.33 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.38 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.94 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.94 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.46 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.78 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.39 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.94 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.98 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.99 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.98 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.99 | MC |
| SRR1761530 | leaf | control | 0.98 | MC |
| SRR1761531 | leaf | control | 0.99 | MC |
| SRR504365 | leaf | wt | 0.99 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.60 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.73 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.95 | MC |
| SRR6417967 | leaf | H2O_control | 2.56 | MC |
| SRR6417968 | leaf | H2O_control | 2.34 | MC |
| SRR6417969 | leaf | H2O_control | 3.32 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.30 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.50 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.36 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.32 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.40 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.54 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.06 | MC |
| SRR8611901 | leaf | Non-inoculated | 3.19 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.15 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.80 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.82 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.25 | MC |
| SRR1213692 | leaf | wt | 2.62 | MC |
| SRR1213693 | leaf | wt | 1.84 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.05 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.39 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.94 | MC |
| SRR6502088 | leaf | control | 1.68 | MC |
| SRR6502089 | leaf | control | 1.68 | MC |
| SRR6502090 | leaf | control | 1.17 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.83 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.50 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.94 | MC |
| SRR6502100 | leaf | control | 1.72 | MC |
| SRR6502101 | leaf | control | 0.65 | MC |
| SRR6502102 | leaf | control | 1.28 | MC |
| SRR5856932 | leaf | salt | 1.55 | MC |
| SRR5856936 | leaf | salt | 1.60 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.26 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 11.19 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 6.96 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.13 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 4.19 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 4.89 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 5.54 | MC |
| SRR6168975 | leaf | none (control) | 4.43 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.03 | MC |
| SRR6168980 | leaf | none (control) | 0.53 | MC |
| SRR6168981 | leaf | none (control) | 0.61 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.14 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.06 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.25 | MC |
| SRR8582889 | panicle | AM | 0.37 | MC |
| SRR8582890 | panicle | AM | 1.04 | MC |
| SRR8582891 | panicle | PM | 2.03 | MC |
| SRR8582892 | panicle | PM | 4.72 | MC |
| SRR1633182 | panicle | WT | 4.11 | MC |
| SRR1633185 | panicle | WT | 5.82 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.14 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.71 | MC |
| SRR5126157 | root | "mock,7_days" | 5.01 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.76 | MC |
| SRR1213695 | root | wt | 1.24 | MC |
| SRR6502095 | root | control | 4.67 | MC |
| SRR6441555 | seedling | wild_type | 2.23 | MC |
| SRR3098741 | seedling | wt | 1.67 | MC |
| SRR3098742 | seedling | wt | 1.35 | MC |
| SRR3098743 | seedling | wt | 1.16 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.52 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.54 | MC |
| SRR1944583 | seedling | no_treatment | 1.74 | MC |
| SRR358791 | seedling | wt | 2.05 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.40 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.68 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.09 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.87 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.18 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.71 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.69 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.96 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 3.05 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.18 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.27 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.12 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.00 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.42 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.70 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.68 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.61 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.11 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.05 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.06 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.36 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.60 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.29 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.78 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.94 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.11 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.85 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.79 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.94 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.63 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.88 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.74 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.00 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.11 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.46 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.09 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.13 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 10.75 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 10.60 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 5.11 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 6.47 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.31 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.36 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.44 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.55 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.51 | MC |