| SRR4457249 | 2nd_leaf | DAH4 | 4.69 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.55 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 3.43 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.79 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.86 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.99 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.95 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.97 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.55 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.85 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.49 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.99 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.04 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.82 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.52 | MC |
| SRR3745126 | anther | wt | 0.46 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.58 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.50 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.71 | MC |
| SRR4947495 | root | control | 3.63 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.87 | MC |
| SRR2338866 | endosprem | control | 3.57 | MC |
| SRR2338869 | endosprem | high_temperature | 3.12 | MC |
| SRR976168 | flag_leaf | wild_type | 0.60 | MC |
| SRR4457231 | flag_leaf | DAH4 | 3.10 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.35 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.99 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.40 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.32 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.42 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.38 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.96 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.43 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.64 | MC |
| SRR4457244 | flag_leaf | DAH36 | 3.61 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.27 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.83 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.65 | MC |
| SRR8240824 | leaf | wild_type | 0.59 | MC |
| SRR8240825 | leaf | wild_type | 0.37 | MC |
| SRR8240826 | leaf | wild_type | 0.27 | MC |
| SRR8240818 | leaf | wild_type | 0.28 | MC |
| SRR8240820 | leaf | wild_type | 0.34 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.66 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.50 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.77 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 6.61 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.26 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 5.34 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.26 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 5.34 | MC |
| SRR1761528 | leaf | drought | 4.26 | MC |
| SRR1761529 | leaf | drought | 5.34 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.96 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.78 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.04 | MC |
| SRR6417967 | leaf | H2O_control | 1.35 | MC |
| SRR6417968 | leaf | H2O_control | 1.53 | MC |
| SRR6417969 | leaf | H2O_control | 2.35 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.88 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.49 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.59 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.85 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.19 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.70 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.52 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.92 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.34 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.61 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.49 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.54 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.92 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.50 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.01 | MC |
| SRR5856927 | leaf | control | 2.11 | MC |
| SRR5856928 | leaf | control | 2.20 | MC |
| SRR5856930 | leaf | salt | 0.50 | MC |
| SRR5856931 | leaf | salt | 0.90 | MC |
| SRR5856932 | leaf | salt | 0.53 | MC |
| SRR5856936 | leaf | salt | 1.10 | MC |
| SRR5856937 | leaf | salt | 1.26 | MC |
| SRR5856938 | leaf | salt | 1.33 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.86 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.40 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.49 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.19 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.07 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.25 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.01 | MC |
| SRR6168973 | leaf | none (control) | 2.56 | MC |
| SRR6168974 | leaf | none (control) | 1.79 | MC |
| SRR6168975 | leaf | none (control) | 1.98 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 5.32 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.46 | MC |
| SRR6168981 | leaf | none (control) | 1.33 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.08 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.78 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.64 | MC |
| SRR8582889 | panicle | AM | 1.29 | MC |
| SRR5110430 | panicle | Dawn | 3.91 | MC |
| SRR4947496 | root | control | 2.85 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 3.57 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.67 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.92 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.66 | MC |
| SRR5110447 | panicle | Dusk | 3.82 | MC |
| SRR5110449 | panicle | Dawn + 14h | 4.91 | MC |
| SRR1633182 | panicle | WT | 3.12 | MC |
| SRR1633185 | panicle | WT | 4.72 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.78 | MC |
| SRR5126148 | root | "mock,1_day" | 3.38 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.41 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.44 | MC |
| SRR1213694 | root | wt | 2.76 | MC |
| SRR4947478 | root | control | 2.69 | MC |
| SRR4947479 | root | control | 2.65 | MC |
| SRR4947480 | root | control | 3.24 | MC |
| SRR4947481 | root | control | 5.58 | MC |
| SRR4947482 | root | Al | 3.19 | MC |
| SRR4947483 | root | Al | 3.38 | MC |
| SRR4947484 | root | Al | 3.03 | MC |
| SRR4947485 | root | Al | 2.92 | MC |
| SRR4947487 | root | control | 3.29 | MC |
| SRR4947488 | root | control | 3.48 | MC |
| SRR4947489 | root | control | 2.49 | MC |
| SRR4947490 | root | Al | 3.61 | MC |
| SRR4947491 | root | Al | 2.87 | MC |
| SRR4947492 | root | Al | 4.66 | MC |
| SRR4947493 | root | Al | 2.68 | MC |
| SRR4947494 | root | control | 3.37 | MC |
| SRR4947497 | root | control | 4.59 | MC |
| SRR4947498 | root | Al | 2.79 | MC |
| SRR4947499 | root | Al | 3.18 | MC |
| SRR4947500 | root | Al | 4.48 | MC |
| SRR4947501 | root | Al | 5.24 | MC |
| SRR4947502 | root | control | 5.46 | MC |
| SRR4947504 | root | control | 4.21 | MC |
| SRR4947505 | root | control | 3.62 | MC |
| SRR4947506 | root | Al | 3.17 | MC |
| SRR4947507 | root | Al | 4.19 | MC |
| SRR4947508 | root | Al | 3.36 | MC |
| SRR4947509 | root | Al | 4.14 | MC |
| SRR6502094 | root | control | 4.49 | MC |
| SRR6502096 | root | control | 4.46 | MC |
| SRR6502105 | root | 100 mM NaCl | 4.02 | MC |
| SRR6502106 | root | control | 3.86 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.97 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.97 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.30 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.08 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.77 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.92 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.83 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.78 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.84 | MC |
| SRR1944583 | seedling | no_treatment | 3.72 | MC |
| SRR358791 | seedling | wt | 7.39 | MC |
| SRR358792 | seedling | wt | 6.33 | MC |
| SRR358793 | seedling | wt | 1.00 | MC |
| SRR358794 | seedling | wt | 1.05 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.31 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.69 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.72 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.88 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.23 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.76 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.15 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.54 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.61 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.87 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.79 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.59 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.86 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.68 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.90 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.50 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.38 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.27 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.26 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 7.55 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 6.70 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.77 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 8.88 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 7.80 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 6.74 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.36 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 5.50 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.63 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 7.60 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 7.64 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 7.95 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 7.95 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 6.61 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 11.04 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 7.54 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 6.23 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 8.61 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 5.28 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 5.12 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 5.72 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 5.56 | MC |