| SRR3745125 | anther | wt | 0.63 | MC |
| SRR3745126 | anther | wt | 0.62 | MC |
| SRR3745127 | anther | wt | 0.71 | MC |
| SRR358795 | callus | wt | 4.49 | MC |
| SRR358796 | callus | wt | 4.53 | MC |
| SRR358797 | callus | wt | 3.14 | MC |
| SRR358798 | callus | wt | 2.74 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.63 | MC |
| SRR7265401 | coleoptile | 2dA | 0.34 | MC |
| SRR7265402 | coleoptile | 2dA | 0.41 | MC |
| SRR7265404 | coleoptile | 2dN | 0.34 | MC |
| SRR7265405 | coleoptile | 2dN | 0.37 | MC |
| SRR7265406 | coleoptile | 3dA | 0.29 | MC |
| SRR7265407 | coleoptile | 3dA | 0.26 | MC |
| SRR7265409 | coleoptile | 3dN | 0.46 | MC |
| SRR7265410 | coleoptile | 3dN | 0.50 | MC |
| SRR7265411 | coleoptile | 3dN | 0.44 | MC |
| SRR7265414 | coleoptile | 4dA | 0.48 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.60 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.52 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.53 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.49 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.31 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.08 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.63 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.03 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.92 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.78 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.63 | MC |
| SRR7265376 | embryo | 1hA | 1.42 | MC |
| SRR7265377 | embryo | 1hA | 1.20 | MC |
| SRR7265378 | embryo | 1hA | 1.27 | MC |
| SRR7265379 | embryo | 1hN | 1.58 | MC |
| SRR7265380 | embryo | 1hN | 1.46 | MC |
| SRR7265381 | embryo | 1hN | 1.36 | MC |
| SRR7265382 | embryo | 3hA | 0.54 | MC |
| SRR7265383 | embryo | 3hA | 0.69 | MC |
| SRR7265384 | embryo | 3hA | 0.55 | MC |
| SRR7265385 | embryo | 3hN | 1.30 | MC |
| SRR7265386 | embryo | 3hN | 1.30 | MC |
| SRR7265387 | embryo | 3hN | 1.22 | MC |
| SRR7265390 | embryo | 12hA | 0.51 | MC |
| SRR7265391 | embryo | 12hN | 0.55 | MC |
| SRR7265392 | embryo | 12hN | 0.52 | MC |
| SRR7265393 | embryo | 12hN | 0.58 | MC |
| SRR7265398 | embryo | 24hN | 0.69 | MC |
| SRR7265399 | embryo | 24hN | 0.52 | MC |
| SRR2338866 | endosprem | control | 1.57 | MC |
| SRR2338867 | endosprem | control | 0.63 | MC |
| SRR2338868 | endosprem | high_temperature | 1.40 | MC |
| SRR2338869 | endosprem | high_temperature | 2.05 | MC |
| SRR976168 | flag_leaf | wild_type | 1.11 | MC |
| SRR8240818 | leaf | wild_type | 2.12 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.14 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.08 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.70 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.37 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.03 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.58 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.19 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.81 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.98 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.81 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.06 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.37 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.50 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.45 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.61 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.21 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.07 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.89 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.79 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.63 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.79 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.63 | MC |
| SRR1761528 | leaf | drought | 2.79 | MC |
| SRR1761529 | leaf | drought | 3.63 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.12 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.85 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.76 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.64 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 4.27 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.58 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.94 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.71 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.34 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 4.07 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.21 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.02 | MC |
| SRR6502088 | leaf | control | 3.28 | MC |
| SRR6502089 | leaf | control | 4.03 | MC |
| SRR6502090 | leaf | control | 3.84 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.64 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.61 | MC |
| SRR6502100 | leaf | control | 2.60 | MC |
| SRR6502101 | leaf | control | 3.11 | MC |
| SRR6502102 | leaf | control | 2.99 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.29 | MC |
| SRR5110429 | panicle | Dawn | 0.79 | MC |
| SRR5110430 | panicle | Dawn | 0.60 | MC |
| SRR5110431 | panicle | Dawn | 0.80 | MC |
| SRR5110432 | panicle | Dawn | 0.78 | MC |
| SRR4947496 | root | control | 2.33 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.28 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.96 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.06 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.90 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.08 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.85 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.64 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.55 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.03 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.19 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.38 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.52 | MC |
| SRR5110445 | panicle | Dusk | 1.10 | MC |
| SRR5110446 | panicle | Dusk | 1.45 | MC |
| SRR5110447 | panicle | Dusk | 1.80 | MC |
| SRR5110448 | panicle | Dusk | 1.64 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.97 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.19 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.97 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.70 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.98 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.93 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.22 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.70 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.79 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.78 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.58 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.13 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.32 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.42 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.54 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.41 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 5.81 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 6.56 | MC |
| SRR5126147 | root | "mock,1_day" | 1.83 | MC |
| SRR5126148 | root | "mock,1_day" | 1.77 | MC |
| SRR5126149 | root | "mock,1_day" | 3.61 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.48 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.89 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.42 | MC |
| SRR5126153 | root | "mock,7_days" | 3.19 | MC |
| SRR5126155 | root | "mock,7_days" | 4.02 | MC |
| SRR5126157 | root | "mock,7_days" | 4.41 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.96 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.10 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.98 | MC |
| SRR5126165 | root | "mock,14_days" | 2.13 | MC |
| SRR5126167 | root | "mock,14_days" | 2.01 | MC |
| SRR5126169 | root | "mock,14_days" | 4.54 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.66 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.51 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 5.30 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.60 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.68 | MC |
| SRR1213694 | root | wt | 2.88 | MC |
| SRR4947480 | root | control | 2.06 | MC |
| SRR4947481 | root | control | 2.68 | MC |
| SRR4947484 | root | Al | 1.71 | MC |
| SRR4947485 | root | Al | 2.66 | MC |
| SRR4947488 | root | control | 2.64 | MC |
| SRR4947489 | root | control | 2.59 | MC |
| SRR4947492 | root | Al | 1.65 | MC |
| SRR4947493 | root | Al | 2.42 | MC |
| SRR4947497 | root | control | 2.61 | MC |
| SRR4947500 | root | Al | 1.42 | MC |
| SRR4947501 | root | Al | 2.47 | MC |
| SRR4947504 | root | control | 2.41 | MC |
| SRR4947505 | root | control | 2.81 | MC |
| SRR4947508 | root | Al | 1.62 | MC |
| SRR4947509 | root | Al | 1.52 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.57 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.00 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.49 | MC |
| SRR6502094 | root | control | 3.25 | MC |
| SRR6502095 | root | control | 2.94 | MC |
| SRR6502096 | root | control | 2.07 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.73 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.12 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.90 | MC |
| SRR6502106 | root | control | 2.08 | MC |
| SRR6502107 | root | control | 1.45 | MC |
| SRR6502108 | root | control | 1.43 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.93 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.36 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.43 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.04 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.50 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.62 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.97 | MC |
| SRR2154085 | seedling | wt | 2.60 | MC |
| SRR2154087 | seedling | wt | 2.54 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.67 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.39 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.64 | MC |
| SRR358791 | seedling | wt | 6.63 | MC |
| SRR358792 | seedling | wt | 5.98 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.06 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.77 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.25 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 8.61 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.69 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 5.32 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 7.40 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.82 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 7.39 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 6.48 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 5.91 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 7.36 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 6.05 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 6.70 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 7.98 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 7.01 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.79 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 8.35 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 7.42 | MC |