| SRR4457263 | 2nd_leaf | DAH36 | 4.19 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.65 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.90 | MC |
| SRR358795 | callus | wt | 2.54 | MC |
| SRR358796 | callus | wt | 3.61 | MC |
| SRR358797 | callus | wt | 2.91 | MC |
| SRR358798 | callus | wt | 4.36 | MC |
| SRR6320473 | carpel | wt | 3.86 | MC |
| SRR6320498 | carpel | wt | 6.21 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.53 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.69 | MC |
| SRR4947495 | root | control | 4.43 | MC |
| SRR7265406 | coleoptile | 3dA | 3.35 | MC |
| SRR7265407 | coleoptile | 3dA | 2.34 | MC |
| SRR7265408 | coleoptile | 3dA | 2.42 | MC |
| SRR7265409 | coleoptile | 3dN | 3.70 | MC |
| SRR7265411 | coleoptile | 3dN | 3.17 | MC |
| SRR7265412 | coleoptile | 4dA | 0.50 | MC |
| SRR7265413 | coleoptile | 4dA | 3.42 | MC |
| SRR7265414 | coleoptile | 4dA | 2.30 | MC |
| SRR7265415 | coleoptile | 4dN | 2.40 | MC |
| SRR7265416 | coleoptile | 4dN | 4.29 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.17 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.51 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.84 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.81 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.72 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.23 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.37 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.66 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.85 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.78 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.87 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.24 | MC |
| SRR7265376 | embryo | 1hA | 1.50 | MC |
| SRR7265377 | embryo | 1hA | 1.20 | MC |
| SRR7265378 | embryo | 1hA | 1.63 | MC |
| SRR7265379 | embryo | 1hN | 0.79 | MC |
| SRR7265380 | embryo | 1hN | 1.76 | MC |
| SRR7265381 | embryo | 1hN | 1.63 | MC |
| SRR7265382 | embryo | 3hA | 3.22 | MC |
| SRR7265383 | embryo | 3hA | 1.56 | MC |
| SRR7265384 | embryo | 3hA | 2.35 | MC |
| SRR7265385 | embryo | 3hN | 1.39 | MC |
| SRR7265386 | embryo | 3hN | 1.25 | MC |
| SRR7265387 | embryo | 3hN | 1.19 | MC |
| SRR7265394 | embryo | 24hA | 4.82 | MC |
| SRR2338867 | endosprem | control | 2.16 | MC |
| SRR2338868 | endosprem | high_temperature | 2.09 | MC |
| SRR2338869 | endosprem | high_temperature | 2.10 | MC |
| SRR4457247 | flag_leaf | DAH44 | 5.55 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.98 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.75 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.01 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.05 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.81 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.05 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.81 | MC |
| SRR1761528 | leaf | drought | 3.05 | MC |
| SRR1761529 | leaf | drought | 1.81 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.89 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.52 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.68 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.41 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.42 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.83 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.27 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.09 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.35 | MC |
| SRR1213693 | leaf | wt | 2.85 | MC |
| SRR6502090 | leaf | control | 3.68 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 6.99 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.28 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.70 | MC |
| SRR6168979 | leaf | none (control) | 1.26 | MC |
| SRR6168980 | leaf | none (control) | 0.23 | MC |
| SRR6168981 | leaf | none (control) | 0.38 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.13 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.08 | MC |
| SRR4947496 | root | control | 1.43 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.54 | MC |
| SRR1633182 | panicle | WT | 3.20 | MC |
| SRR1633185 | panicle | WT | 3.51 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.48 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.38 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.92 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.78 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 5.52 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.82 | MC |
| SRR5126149 | root | "mock,1_day" | 2.04 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.72 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.52 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 4.12 | MC |
| SRR5126155 | root | "mock,7_days" | 3.85 | MC |
| SRR5126157 | root | "mock,7_days" | 2.76 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.57 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.61 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.69 | MC |
| SRR5126165 | root | "mock,14_days" | 1.92 | MC |
| SRR5126167 | root | "mock,14_days" | 1.65 | MC |
| SRR5126169 | root | "mock,14_days" | 3.79 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.67 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.78 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.81 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.98 | MC |
| SRR1213694 | root | wt | 1.29 | MC |
| SRR1213695 | root | wt | 3.16 | MC |
| SRR4947478 | root | control | 2.11 | MC |
| SRR4947479 | root | control | 2.09 | MC |
| SRR4947480 | root | control | 2.51 | MC |
| SRR4947481 | root | control | 2.24 | MC |
| SRR4947482 | root | Al | 2.45 | MC |
| SRR4947483 | root | Al | 2.73 | MC |
| SRR4947484 | root | Al | 2.93 | MC |
| SRR4947485 | root | Al | 2.74 | MC |
| SRR4947487 | root | control | 0.86 | MC |
| SRR4947488 | root | control | 2.11 | MC |
| SRR4947489 | root | control | 2.39 | MC |
| SRR4947490 | root | Al | 2.65 | MC |
| SRR4947492 | root | Al | 1.83 | MC |
| SRR4947493 | root | Al | 1.67 | MC |
| SRR4947494 | root | control | 3.53 | MC |
| SRR4947497 | root | control | 1.65 | MC |
| SRR4947498 | root | Al | 4.09 | MC |
| SRR4947499 | root | Al | 3.48 | MC |
| SRR4947500 | root | Al | 3.08 | MC |
| SRR4947501 | root | Al | 4.20 | MC |
| SRR4947502 | root | control | 3.54 | MC |
| SRR4947503 | root | control | 1.70 | MC |
| SRR4947504 | root | control | 3.17 | MC |
| SRR4947505 | root | control | 2.77 | MC |
| SRR4947506 | root | Al | 1.73 | MC |
| SRR4947507 | root | Al | 4.84 | MC |
| SRR4947508 | root | Al | 1.97 | MC |
| SRR4947509 | root | Al | 1.69 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.08 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.06 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.23 | MC |
| SRR6502094 | root | control | 2.34 | MC |
| SRR6502095 | root | control | 2.95 | MC |
| SRR6502096 | root | control | 2.34 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.45 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.12 | MC |
| SRR6502105 | root | 100 mM NaCl | 4.04 | MC |
| SRR6502106 | root | control | 2.89 | MC |
| SRR6502107 | root | control | 2.86 | MC |
| SRR6502108 | root | control | 2.09 | MC |
| SRR1740434 | root_differentiation_zone | wt | 3.40 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.39 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.65 | MC |
| SRR1740428 | root_meristematic_zone | wt | 4.28 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.23 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.19 | MC |
| SRR1944583 | seedling | no_treatment | 4.14 | MC |
| SRR358791 | seedling | wt | 5.88 | MC |
| SRR358792 | seedling | wt | 6.02 | MC |
| SRR358793 | seedling | wt | 4.66 | MC |
| SRR358794 | seedling | wt | 3.43 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.92 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.65 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.02 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.15 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.92 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.62 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.59 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.15 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.74 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.79 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.58 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 4.19 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.24 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 3.12 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.77 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.30 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.39 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 8.03 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 8.41 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 7.15 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 7.10 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 7.88 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 7.32 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 8.23 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 6.95 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 7.36 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.95 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 6.55 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 4.26 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.04 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.01 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 5.52 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.16 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 6.46 | MC |