| SRR4457256 | 2nd_leaf | DAH20 | 4.21 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.58 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.61 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 3.77 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.77 | MC |
| SRR3745125 | anther | wt | 0.60 | MC |
| SRR3745127 | anther | wt | 1.05 | MC |
| SRR358795 | callus | wt | 7.19 | MC |
| SRR358796 | callus | wt | 8.16 | MC |
| SRR358797 | callus | wt | 9.31 | MC |
| SRR358798 | callus | wt | 5.84 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.57 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.17 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.67 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.74 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.37 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.00 | MC |
| SRR7265376 | embryo | 1hA | 0.97 | MC |
| SRR7265377 | embryo | 1hA | 1.14 | MC |
| SRR7265378 | embryo | 1hA | 1.02 | MC |
| SRR7265379 | embryo | 1hN | 0.86 | MC |
| SRR7265380 | embryo | 1hN | 1.14 | MC |
| SRR7265381 | embryo | 1hN | 1.13 | MC |
| SRR7265382 | embryo | 3hA | 2.88 | MC |
| SRR7265383 | embryo | 3hA | 1.77 | MC |
| SRR7265384 | embryo | 3hA | 2.20 | MC |
| SRR7265385 | embryo | 3hN | 1.55 | MC |
| SRR7265386 | embryo | 3hN | 1.23 | MC |
| SRR7265387 | embryo | 3hN | 0.81 | MC |
| SRR2338867 | endosprem | control | 1.46 | MC |
| SRR2338868 | endosprem | high_temperature | 2.07 | MC |
| SRR976168 | flag_leaf | wild_type | 0.76 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.73 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.56 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.74 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.89 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.47 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.83 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.46 | MC |
| SRR8060835 | leaf | wild_type | 1.09 | MC |
| SRR8060836 | leaf | wild_type | 1.30 | MC |
| SRR8060837 | leaf | wild_type | 0.63 | MC |
| SRR8240824 | leaf | wild_type | 2.48 | MC |
| SRR8240825 | leaf | wild_type | 0.86 | MC |
| SRR8240826 | leaf | wild_type | 0.42 | MC |
| SRR8240818 | leaf | wild_type | 0.75 | MC |
| SRR8240819 | leaf | wild_type | 0.62 | MC |
| SRR8240820 | leaf | wild_type | 2.07 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.30 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.77 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.85 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.95 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.19 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.39 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.98 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.37 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.36 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.35 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.55 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.18 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.41 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.21 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.63 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.19 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.72 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.83 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.54 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.30 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.18 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.56 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.40 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.59 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.84 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.54 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.09 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.29 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.40 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.33 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.27 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.01 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 4.51 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.88 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.26 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.01 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 4.52 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.88 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.26 | MC |
| SRR1761528 | leaf | drought | 4.01 | MC |
| SRR1761529 | leaf | drought | 4.52 | MC |
| SRR1761530 | leaf | control | 4.88 | MC |
| SRR1761531 | leaf | control | 5.26 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.66 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.46 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.98 | MC |
| SRR6417968 | leaf | H2O_control | 0.69 | MC |
| SRR6417969 | leaf | H2O_control | 0.49 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.34 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.88 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.81 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.42 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.28 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.90 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.96 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.29 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.53 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.92 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.12 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.05 | MC |
| SRR6502088 | leaf | control | 3.03 | MC |
| SRR6502089 | leaf | control | 1.14 | MC |
| SRR6502090 | leaf | control | 2.38 | MC |
| SRR6502100 | leaf | control | 4.37 | MC |
| SRR6502101 | leaf | control | 2.66 | MC |
| SRR6502102 | leaf | control | 4.12 | MC |
| SRR5856930 | leaf | salt | 1.46 | MC |
| SRR8582888 | panicle | AM | 0.50 | MC |
| SRR8582889 | panicle | AM | 0.25 | MC |
| SRR8582890 | panicle | AM | 1.73 | MC |
| SRR8582891 | panicle | PM | 3.69 | MC |
| SRR8582892 | panicle | PM | 2.97 | MC |
| SRR8582893 | panicle | PM | 2.90 | MC |
| SRR5110432 | panicle | Dawn | 0.51 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.76 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.26 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.44 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 3.24 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.90 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 4.34 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.93 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.74 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.95 | MC |
| SRR4947483 | root | Al | 0.56 | MC |
| SRR4947503 | root | control | 1.01 | MC |
| SRR6502094 | root | control | 5.06 | MC |
| SRR6502095 | root | control | 3.06 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.58 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.24 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.81 | MC |
| SRR1740429 | root_meristematic_zone | wt | 3.05 | MC |
| SRR6441554 | seedling | wild_type | 2.91 | MC |
| SRR6441555 | seedling | wild_type | 2.12 | MC |
| SRR2154083 | seedling | wt | 0.42 | MC |
| SRR2154085 | seedling | wt | 1.25 | MC |
| SRR1944583 | seedling | no_treatment | 1.97 | MC |
| SRR358791 | seedling | wt | 4.51 | MC |
| SRR358792 | seedling | wt | 2.34 | MC |
| SRR358793 | seedling | wt | 3.57 | MC |
| SRR358794 | seedling | wt | 2.55 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.27 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.83 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.75 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.35 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.53 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.31 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.23 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.18 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.57 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.49 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.35 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.53 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.47 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 3.51 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.63 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.04 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.86 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.14 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.21 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.26 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.71 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.16 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.36 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.52 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.51 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.66 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.69 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.37 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.99 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.94 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.76 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.76 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.07 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 6.40 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.48 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 6.29 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.51 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 7.97 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.37 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.20 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 5.52 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.87 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.12 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.44 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.52 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.54 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.57 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.44 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.43 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.00 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.09 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.50 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.83 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.03 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.66 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 8.05 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 6.11 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 7.99 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.50 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.45 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.31 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.42 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.23 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.11 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.14 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.97 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.20 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.36 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.88 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.21 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.38 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.59 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.08 | MC |