| SRR4457250 | 2nd_leaf | DAH4 | 4.48 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.77 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.59 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.26 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.83 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.42 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.84 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.08 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 3.04 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.49 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.44 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.94 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.02 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.41 | MC |
| SRR358795 | callus | wt | 2.27 | MC |
| SRR358798 | callus | wt | 2.03 | MC |
| SRR5560727 | caryopsis | wild_type | 1.60 | MC |
| SRR5560728 | caryopsis | wild_type | 5.22 | MC |
| SRR5560729 | caryopsis | wild_type | 0.55 | MC |
| SRR4947495 | root | control | 3.21 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.92 | MC |
| SRR7265400 | coleoptile | 2dA | 2.32 | MC |
| SRR7265401 | coleoptile | 2dA | 3.23 | MC |
| SRR7265402 | coleoptile | 2dA | 3.03 | MC |
| SRR7265409 | coleoptile | 3dN | 1.60 | MC |
| SRR7265410 | coleoptile | 3dN | 1.08 | MC |
| SRR7265411 | coleoptile | 3dN | 1.36 | MC |
| SRR7265415 | coleoptile | 4dN | 1.41 | MC |
| SRR7265416 | coleoptile | 4dN | 1.68 | MC |
| SRR7265417 | coleoptile | 4dN | 1.30 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.02 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.29 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.26 | MC |
| SRR7265377 | embryo | 1hA | 0.70 | MC |
| SRR7265378 | embryo | 1hA | 0.36 | MC |
| SRR7265381 | embryo | 1hN | 0.24 | MC |
| SRR7265382 | embryo | 3hA | 0.78 | MC |
| SRR7265384 | embryo | 3hA | 1.07 | MC |
| SRR7265386 | embryo | 3hN | 0.42 | MC |
| SRR7265388 | embryo | 12hA | 2.81 | MC |
| SRR7265389 | embryo | 12hA | 1.77 | MC |
| SRR7265390 | embryo | 12hA | 3.05 | MC |
| SRR7265394 | embryo | 24hA | 4.44 | MC |
| SRR7265395 | embryo | 24hA | 2.90 | MC |
| SRR7265396 | embryo | 24hA | 3.15 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.14 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.81 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.81 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.33 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.76 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.49 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.56 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.12 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.05 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.51 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.36 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.25 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.48 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.11 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.68 | MC |
| SRR8240824 | leaf | wild_type | 2.15 | MC |
| SRR8240825 | leaf | wild_type | 2.21 | MC |
| SRR8240826 | leaf | wild_type | 0.79 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.85 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.53 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.61 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.07 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.78 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.03 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.10 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.96 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.87 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.60 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.93 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.47 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.33 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.78 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.70 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.77 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.64 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.43 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.44 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.85 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.48 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.93 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.63 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.52 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.72 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.02 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.25 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.99 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.93 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 4.07 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.89 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.85 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 4.07 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.89 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.85 | MC |
| SRR1761529 | leaf | drought | 4.07 | MC |
| SRR1761530 | leaf | control | 2.89 | MC |
| SRR1761531 | leaf | control | 2.85 | MC |
| SRR504365 | leaf | wt | 2.15 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.45 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.60 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.85 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.69 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.84 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.88 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.48 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.96 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.64 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.42 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.75 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.99 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.89 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.06 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.17 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.33 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.01 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.48 | MC |
| SRR6502089 | leaf | control | 1.53 | MC |
| SRR6502090 | leaf | control | 1.23 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.88 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.81 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.46 | MC |
| SRR6502100 | leaf | control | 1.78 | MC |
| SRR6502102 | leaf | control | 2.68 | MC |
| SRR6168973 | leaf | none (control) | 0.64 | MC |
| SRR6168975 | leaf | none (control) | 2.22 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.92 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.41 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.32 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.61 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.74 | MC |
| SRR8582890 | panicle | AM | 0.27 | MC |
| SRR8582891 | panicle | PM | 1.65 | MC |
| SRR8582893 | panicle | PM | 1.54 | MC |
| SRR5110430 | panicle | Dawn | 4.97 | MC |
| SRR5110431 | panicle | Dawn | 3.61 | MC |
| SRR5110432 | panicle | Dawn | 3.08 | MC |
| SRR4947496 | root | control | 1.74 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.45 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.01 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.64 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.19 | MC |
| SRR5110438 | panicle | Dawn + 7h | 4.16 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.29 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.00 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.81 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.75 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.11 | MC |
| SRR5110452 | panicle | Dawn + 14h | 4.66 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.34 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.72 | MC |
| SRR5110458 | panicle | Dawn + 21h | 3.00 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.56 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.01 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.35 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 5.02 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.58 | MC |
| SRR5126147 | root | "mock,1_day" | 0.67 | MC |
| SRR5126148 | root | "mock,1_day" | 0.68 | MC |
| SRR5126149 | root | "mock,1_day" | 1.24 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.94 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.04 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.01 | MC |
| SRR5126153 | root | "mock,7_days" | 1.09 | MC |
| SRR5126155 | root | "mock,7_days" | 2.93 | MC |
| SRR5126157 | root | "mock,7_days" | 3.57 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.89 | MC |
| SRR5126169 | root | "mock,14_days" | 4.23 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.86 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.50 | MC |
| SRR4947478 | root | control | 2.66 | MC |
| SRR4947479 | root | control | 4.29 | MC |
| SRR4947480 | root | control | 3.65 | MC |
| SRR4947481 | root | control | 5.49 | MC |
| SRR4947483 | root | Al | 3.06 | MC |
| SRR4947484 | root | Al | 1.87 | MC |
| SRR4947485 | root | Al | 3.53 | MC |
| SRR4947487 | root | control | 3.58 | MC |
| SRR4947488 | root | control | 2.36 | MC |
| SRR4947489 | root | control | 1.39 | MC |
| SRR4947490 | root | Al | 4.30 | MC |
| SRR4947492 | root | Al | 0.98 | MC |
| SRR4947493 | root | Al | 0.78 | MC |
| SRR4947494 | root | control | 2.96 | MC |
| SRR4947497 | root | control | 3.63 | MC |
| SRR4947498 | root | Al | 1.80 | MC |
| SRR4947499 | root | Al | 3.38 | MC |
| SRR4947500 | root | Al | 1.15 | MC |
| SRR4947501 | root | Al | 0.74 | MC |
| SRR4947502 | root | control | 1.60 | MC |
| SRR4947503 | root | control | 4.40 | MC |
| SRR4947504 | root | control | 2.80 | MC |
| SRR4947505 | root | control | 3.76 | MC |
| SRR4947506 | root | Al | 2.32 | MC |
| SRR4947507 | root | Al | 0.99 | MC |
| SRR4947508 | root | Al | 0.62 | MC |
| SRR4947509 | root | Al | 1.66 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.78 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.68 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.40 | MC |
| SRR6441554 | seedling | wild_type | 1.14 | MC |
| SRR2154084 | seedling | wt | 2.91 | MC |
| SRR2154087 | seedling | wt | 3.13 | MC |
| SRR3098741 | seedling | wt | 1.68 | MC |
| SRR3098742 | seedling | wt | 0.63 | MC |
| SRR3098743 | seedling | wt | 0.56 | MC |
| SRR358791 | seedling | wt | 2.09 | MC |
| SRR358792 | seedling | wt | 0.94 | MC |
| SRR358793 | seedling | wt | 2.68 | MC |
| SRR358794 | seedling | wt | 1.66 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.67 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.84 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.60 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.16 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.41 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.74 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.79 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.61 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.45 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.36 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.82 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.23 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.00 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.99 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.16 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.45 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.15 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.43 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.57 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.92 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.38 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.97 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.10 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.97 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.79 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.47 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.99 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.81 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.92 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.61 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.63 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.33 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 6.02 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.11 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.77 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.41 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.60 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.73 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.49 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.58 | MC |