| SRR4457250 | 2nd_leaf | DAH4 | 0.52 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.29 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.61 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.77 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.49 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.70 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.65 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.44 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.90 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.66 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.92 | MC |
| SRR6320473 | carpel | wt | 5.36 | MC |
| SRR6320498 | carpel | wt | 5.07 | MC |
| SRR5560729 | caryopsis | wild_type | 2.59 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.33 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.02 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.84 | MC |
| SRR7265400 | coleoptile | 2dA | 0.35 | MC |
| SRR7265402 | coleoptile | 2dA | 0.38 | MC |
| SRR7265403 | coleoptile | 2dN | 0.41 | MC |
| SRR7265405 | coleoptile | 2dN | 0.31 | MC |
| SRR7265406 | coleoptile | 3dA | 0.32 | MC |
| SRR7265409 | coleoptile | 3dN | 0.38 | MC |
| SRR7265413 | coleoptile | 4dA | 0.58 | MC |
| SRR7265416 | coleoptile | 4dN | 0.84 | MC |
| SRR7265417 | coleoptile | 4dN | 1.08 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.56 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.70 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.15 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.52 | MC |
| SRR7265388 | embryo | 12hA | 3.83 | MC |
| SRR7265389 | embryo | 12hA | 4.78 | MC |
| SRR7265392 | embryo | 12hN | 3.79 | MC |
| SRR7265397 | embryo | 24hN | 0.56 | MC |
| SRR7265398 | embryo | 24hN | 0.54 | MC |
| SRR7265399 | embryo | 24hN | 0.51 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.24 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.37 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.54 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.67 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.69 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.75 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.52 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.74 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.71 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.41 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.58 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.96 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.24 | MC |
| SRR8240824 | leaf | wild_type | 2.09 | MC |
| SRR8240826 | leaf | wild_type | 1.34 | MC |
| SRR8240819 | leaf | wild_type | 0.43 | MC |
| SRR8240820 | leaf | wild_type | 0.28 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.40 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.72 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.08 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.41 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.89 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.31 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.35 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.78 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.90 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.70 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.07 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.83 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.44 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.60 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.69 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.40 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.04 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.74 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.81 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.45 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.29 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.52 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.59 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.60 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.63 | MC |
| SRR1761530 | leaf | control | 0.46 | MC |
| SRR1761531 | leaf | control | 0.63 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.23 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.28 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.46 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.37 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.37 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.14 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.49 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.80 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.80 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.54 | MC |
| SRR6502100 | leaf | control | 3.93 | MC |
| SRR6502101 | leaf | control | 3.75 | MC |
| SRR6502102 | leaf | control | 3.29 | MC |
| SRR5856928 | leaf | control | 1.25 | MC |
| SRR5856929 | leaf | control | 1.33 | MC |
| SRR5856933 | leaf | control | 1.08 | MC |
| SRR5856934 | leaf | control | 1.80 | MC |
| SRR6168973 | leaf | none (control) | 1.21 | MC |
| SRR6168974 | leaf | none (control) | 1.60 | MC |
| SRR6168975 | leaf | none (control) | 0.63 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.41 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.54 | MC |
| SRR8582888 | panicle | AM | 0.58 | MC |
| SRR8582889 | panicle | AM | 0.55 | MC |
| SRR1633182 | panicle | WT | 0.41 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.20 | MC |
| SRR5126149 | root | "mock,1_day" | 1.57 | MC |
| SRR5126155 | root | "mock,7_days" | 0.76 | MC |
| SRR5126157 | root | "mock,7_days" | 1.70 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.93 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.73 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.59 | MC |
| SRR5126165 | root | "mock,14_days" | 1.11 | MC |
| SRR5126169 | root | "mock,14_days" | 0.85 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.80 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.96 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.61 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.00 | MC |
| SRR6502094 | root | control | 0.48 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.67 | MC |
| SRR6502107 | root | control | 0.42 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.45 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.31 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.42 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.18 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.61 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.31 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.23 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.96 | MC |
| SRR6441555 | seedling | wild_type | 0.39 | MC |
| SRR2154086 | seedling | wt | 1.26 | MC |
| SRR2154083 | seedling | wt | 0.31 | MC |
| SRR2154087 | seedling | wt | 1.15 | MC |
| SRR3098741 | seedling | wt | 0.20 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.53 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.25 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.66 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.75 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.67 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.09 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.49 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.70 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.18 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.32 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.38 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.32 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.39 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.19 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.20 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.50 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 3.75 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 4.86 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 6.81 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.25 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.81 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.07 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.15 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.52 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.47 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.36 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.41 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.27 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.95 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 6.67 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 4.43 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.83 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.13 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.54 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.30 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 5.49 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.29 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.11 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.07 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.03 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.37 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.24 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.09 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.73 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.60 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.53 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.62 | MC |