| SRR358797 | callus | wt | 5.31 | MC |
| SRR5560727 | caryopsis | wild_type | 0.77 | MC |
| SRR5560728 | caryopsis | wild_type | 0.37 | MC |
| SRR5560729 | caryopsis | wild_type | 1.26 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.63 | MC |
| SRR4947495 | root | control | 2.66 | MC |
| SRR7265400 | coleoptile | 2dA | 0.86 | MC |
| SRR7265401 | coleoptile | 2dA | 0.47 | MC |
| SRR7265402 | coleoptile | 2dA | 1.03 | MC |
| SRR7265403 | coleoptile | 2dN | 1.92 | MC |
| SRR7265404 | coleoptile | 2dN | 1.59 | MC |
| SRR7265405 | coleoptile | 2dN | 2.19 | MC |
| SRR7265406 | coleoptile | 3dA | 0.42 | MC |
| SRR7265408 | coleoptile | 3dA | 0.74 | MC |
| SRR7265409 | coleoptile | 3dN | 0.64 | MC |
| SRR7265411 | coleoptile | 3dN | 0.61 | MC |
| SRR7265413 | coleoptile | 4dA | 1.23 | MC |
| SRR7265415 | coleoptile | 4dN | 1.47 | MC |
| SRR7265416 | coleoptile | 4dN | 1.19 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.58 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.69 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.71 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.64 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.83 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.61 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.34 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.83 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.65 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.81 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.82 | MC |
| SRR7265376 | embryo | 1hA | 2.12 | MC |
| SRR7265377 | embryo | 1hA | 2.50 | MC |
| SRR7265378 | embryo | 1hA | 1.63 | MC |
| SRR7265379 | embryo | 1hN | 1.43 | MC |
| SRR7265380 | embryo | 1hN | 1.59 | MC |
| SRR7265381 | embryo | 1hN | 1.51 | MC |
| SRR7265382 | embryo | 3hA | 1.33 | MC |
| SRR7265383 | embryo | 3hA | 1.86 | MC |
| SRR7265384 | embryo | 3hA | 1.42 | MC |
| SRR7265385 | embryo | 3hN | 2.22 | MC |
| SRR7265386 | embryo | 3hN | 2.25 | MC |
| SRR7265387 | embryo | 3hN | 2.44 | MC |
| SRR7265388 | embryo | 12hA | 2.26 | MC |
| SRR7265389 | embryo | 12hA | 2.23 | MC |
| SRR7265390 | embryo | 12hA | 1.67 | MC |
| SRR7265391 | embryo | 12hN | 1.61 | MC |
| SRR7265392 | embryo | 12hN | 2.11 | MC |
| SRR7265393 | embryo | 12hN | 1.41 | MC |
| SRR7265394 | embryo | 24hA | 0.54 | MC |
| SRR7265395 | embryo | 24hA | 1.32 | MC |
| SRR7265396 | embryo | 24hA | 2.79 | MC |
| SRR7265397 | embryo | 24hN | 1.13 | MC |
| SRR7265398 | embryo | 24hN | 2.11 | MC |
| SRR7265399 | embryo | 24hN | 0.42 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.54 | MC |
| SRR1213691 | flower | wt | 0.77 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.42 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.59 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.19 | MC |
| SRR5856929 | leaf | control | 0.32 | MC |
| SRR5856931 | leaf | salt | 0.27 | MC |
| SRR5856933 | leaf | control | 0.96 | MC |
| SRR5856934 | leaf | control | 0.42 | MC |
| SRR5856935 | leaf | control | 0.51 | MC |
| SRR5856936 | leaf | salt | 0.52 | MC |
| SRR5856938 | leaf | salt | 0.27 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.20 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.64 | MC |
| SRR5110429 | panicle | Dawn | 0.82 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.47 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.46 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.23 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.63 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.96 | MC |
| SRR5110447 | panicle | Dusk | 0.85 | MC |
| SRR5110448 | panicle | Dusk | 1.79 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.77 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.60 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.11 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.46 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.97 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.48 | MC |
| SRR1633185 | panicle | WT | 2.49 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.17 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.70 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.87 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.16 | MC |
| SRR5126147 | root | "mock,1_day" | 0.87 | MC |
| SRR5126148 | root | "mock,1_day" | 1.06 | MC |
| SRR5126149 | root | "mock,1_day" | 0.55 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.01 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.72 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.97 | MC |
| SRR5126155 | root | "mock,7_days" | 1.58 | MC |
| SRR5126157 | root | "mock,7_days" | 0.69 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.57 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.55 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.91 | MC |
| SRR5126165 | root | "mock,14_days" | 1.35 | MC |
| SRR5126167 | root | "mock,14_days" | 0.52 | MC |
| SRR5126169 | root | "mock,14_days" | 0.70 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.47 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.21 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.27 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.34 | MC |
| SRR4947479 | root | control | 0.46 | MC |
| SRR4947480 | root | control | 0.50 | MC |
| SRR4947482 | root | Al | 0.76 | MC |
| SRR4947491 | root | Al | 1.98 | MC |
| SRR4947498 | root | Al | 1.18 | MC |
| SRR4947499 | root | Al | 1.49 | MC |
| SRR4947500 | root | Al | 0.74 | MC |
| SRR4947503 | root | control | 1.83 | MC |
| SRR4947505 | root | control | 1.56 | MC |
| SRR4947507 | root | Al | 1.16 | MC |
| SRR4947509 | root | Al | 0.59 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.23 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.10 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.75 | MC |
| SRR6502106 | root | control | 0.54 | MC |
| SRR6502108 | root | control | 0.66 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.59 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.26 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.83 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.66 | MC |
| SRR1740428 | root_meristematic_zone | wt | 4.13 | MC |
| SRR1740429 | root_meristematic_zone | wt | 3.39 | MC |
| SRR2154082 | seedling | wt | 0.82 | MC |
| SRR2154083 | seedling | wt | 0.76 | MC |
| SRR3098742 | seedling | wt | 0.22 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.51 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.38 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.42 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.56 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.71 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.26 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.69 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.56 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.86 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.76 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.35 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.70 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.77 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.98 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.69 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.30 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.47 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.19 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.75 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.35 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.05 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.13 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.58 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.41 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.42 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.96 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.23 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.67 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.16 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.75 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.72 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.92 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.42 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.61 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 4.46 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.25 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.38 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.57 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.81 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.71 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.89 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.52 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.21 | MC |