| SRR4457252 | 2nd_leaf | DAH12 | 1.56 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.56 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.92 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.79 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.15 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.95 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.76 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.65 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.34 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.14 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.15 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.20 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.04 | MC |
| SRR3745126 | anther | wt | 0.69 | MC |
| SRR3745127 | anther | wt | 2.03 | MC |
| SRR358795 | callus | wt | 8.67 | MC |
| SRR358796 | callus | wt | 9.29 | MC |
| SRR358797 | callus | wt | 8.96 | MC |
| SRR358798 | callus | wt | 8.80 | MC |
| SRR5560727 | caryopsis | wild_type | 4.67 | MC |
| SRR5560728 | caryopsis | wild_type | 3.16 | MC |
| SRR5560729 | caryopsis | wild_type | 1.76 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.42 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.64 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.22 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.98 | MC |
| SRR7265390 | embryo | 12hA | 0.37 | MC |
| SRR7265391 | embryo | 12hN | 0.63 | MC |
| SRR7265392 | embryo | 12hN | 0.42 | MC |
| SRR7265393 | embryo | 12hN | 1.23 | MC |
| SRR2338866 | endosprem | control | 4.56 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.31 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.39 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.49 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.66 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.53 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.78 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.73 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.83 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.57 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.28 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.65 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.24 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.35 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.87 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.86 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.00 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.80 | MC |
| SRR8240819 | leaf | wild_type | 0.20 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.28 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.48 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.75 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.74 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.05 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.42 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.98 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.46 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.41 | MC |
| SRR1761528 | leaf | drought | 2.41 | MC |
| SRR504365 | leaf | wt | 0.21 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.21 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.39 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.54 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.49 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.71 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.47 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.39 | MC |
| SRR1213693 | leaf | wt | 0.26 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.94 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.59 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.51 | MC |
| SRR6502088 | leaf | control | 0.79 | MC |
| SRR6502089 | leaf | control | 1.23 | MC |
| SRR5856935 | leaf | control | 0.21 | MC |
| SRR6168973 | leaf | none (control) | 1.17 | MC |
| SRR6168974 | leaf | none (control) | 3.41 | MC |
| SRR6168975 | leaf | none (control) | 2.05 | MC |
| SRR6168980 | leaf | none (control) | 1.07 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.72 | MC |
| SRR8582889 | panicle | AM | 0.28 | MC |
| SRR1633182 | panicle | WT | 0.46 | MC |
| SRR1633185 | panicle | WT | 0.32 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.41 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.40 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.29 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.42 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.48 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.02 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.46 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.59 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.87 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.79 | MC |
| SRR5126167 | root | "mock,14_days" | 0.75 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.51 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.81 | MC |
| SRR1213695 | root | wt | 0.57 | MC |
| SRR6441555 | seedling | wild_type | 0.53 | MC |
| SRR2154085 | seedling | wt | 0.71 | MC |
| SRR3098741 | seedling | wt | 0.73 | MC |
| SRR3098743 | seedling | wt | 0.48 | MC |
| SRR358792 | seedling | wt | 0.99 | MC |
| SRR358794 | seedling | wt | 0.73 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.51 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.31 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.18 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.17 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.51 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.89 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.08 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.14 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.19 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.98 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.44 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.06 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.51 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.97 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.18 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.89 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.25 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.98 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.32 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.14 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.58 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.66 | MC |