| SRR4457257 | 2nd_leaf | DAH20 | 0.41 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.25 | MC |
| SRR358795 | callus | wt | 3.93 | MC |
| SRR358796 | callus | wt | 2.92 | MC |
| SRR358797 | callus | wt | 5.09 | MC |
| SRR358798 | callus | wt | 5.77 | MC |
| SRR5560727 | caryopsis | wild_type | 0.43 | MC |
| SRR5560728 | caryopsis | wild_type | 0.32 | MC |
| SRR5560729 | caryopsis | wild_type | 0.41 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.69 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.65 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.46 | MC |
| SRR7265401 | coleoptile | 2dA | 2.93 | MC |
| SRR7265402 | coleoptile | 2dA | 2.61 | MC |
| SRR7265406 | coleoptile | 3dA | 1.38 | MC |
| SRR7265407 | coleoptile | 3dA | 1.34 | MC |
| SRR7265408 | coleoptile | 3dA | 1.43 | MC |
| SRR7265410 | coleoptile | 3dN | 3.47 | MC |
| SRR7265412 | coleoptile | 4dA | 1.16 | MC |
| SRR7265413 | coleoptile | 4dA | 2.05 | MC |
| SRR7265414 | coleoptile | 4dA | 1.39 | MC |
| SRR7265416 | coleoptile | 4dN | 2.84 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.33 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.53 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.78 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.63 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.31 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.28 | MC |
| SRR7265380 | embryo | 1hN | 3.79 | MC |
| SRR7265394 | embryo | 24hA | 3.94 | MC |
| SRR2338868 | endosprem | high_temperature | 0.49 | MC |
| SRR2338869 | endosprem | high_temperature | 0.99 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.08 | MC |
| SRR1213691 | flower | wt | 0.67 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.40 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.41 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.23 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.34 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.29 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.48 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.56 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.54 | MC |
| SRR5856931 | leaf | salt | 0.22 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.64 | MC |
| SRR6168973 | leaf | none (control) | 0.56 | MC |
| SRR6168974 | leaf | none (control) | 0.52 | MC |
| SRR6168975 | leaf | none (control) | 0.63 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.61 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.87 | MC |
| SRR5110429 | panicle | Dawn | 0.41 | MC |
| SRR5110430 | panicle | Dawn | 0.94 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.78 | MC |
| SRR1633182 | panicle | WT | 1.28 | MC |
| SRR1633185 | panicle | WT | 2.19 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.21 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.55 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.38 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.17 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.28 | MC |
| SRR5126147 | root | "mock,1_day" | 0.41 | MC |
| SRR5126148 | root | "mock,1_day" | 0.48 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.38 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.60 | MC |
| SRR5126153 | root | "mock,7_days" | 0.57 | MC |
| SRR5126155 | root | "mock,7_days" | 0.39 | MC |
| SRR5126157 | root | "mock,7_days" | 0.42 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.75 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.16 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.84 | MC |
| SRR5126165 | root | "mock,14_days" | 0.40 | MC |
| SRR5126169 | root | "mock,14_days" | 0.45 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.29 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.97 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.34 | MC |
| SRR1213694 | root | wt | 0.65 | MC |
| SRR1213695 | root | wt | 0.13 | MC |
| SRR4947492 | root | Al | 0.73 | MC |
| SRR4947500 | root | Al | 0.64 | MC |
| SRR4947501 | root | Al | 0.57 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.64 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.63 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.76 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.76 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.93 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.67 | MC |
| SRR6502106 | root | control | 0.41 | MC |
| SRR6502107 | root | control | 0.33 | MC |
| SRR6502108 | root | control | 0.51 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.79 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.71 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.38 | MC |
| SRR1740429 | root_meristematic_zone | wt | 3.13 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.48 | MC |
| SRR2154086 | seedling | wt | 0.52 | MC |
| SRR2154085 | seedling | wt | 1.30 | MC |
| SRR2154087 | seedling | wt | 0.82 | MC |
| SRR3098741 | seedling | wt | 0.19 | MC |
| SRR3098742 | seedling | wt | 0.31 | MC |
| SRR3098743 | seedling | wt | 0.23 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.46 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.39 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 6.81 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 6.92 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 5.31 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 6.45 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 8.08 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.68 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.08 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.24 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 5.15 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.52 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.23 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 5.85 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 6.66 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 5.57 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 5.49 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 5.40 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.41 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.44 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.30 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.38 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.81 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.95 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.50 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.35 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.19 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.59 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.47 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.63 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.08 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.93 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.79 | MC |