| SRR4457249 | 2nd_leaf | DAH4 | 2.03 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.50 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.62 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.02 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.90 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.79 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.30 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.47 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.89 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.92 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.14 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.72 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.91 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.11 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.62 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.70 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.56 | MC |
| SRR3745125 | anther | wt | 1.18 | MC |
| SRR3745126 | anther | wt | 1.34 | MC |
| SRR3745127 | anther | wt | 0.75 | MC |
| SRR6320498 | carpel | wt | 6.35 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.68 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.13 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.98 | MC |
| SRR4947495 | root | control | 4.44 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.96 | MC |
| SRR7265406 | coleoptile | 3dA | 3.41 | MC |
| SRR7265407 | coleoptile | 3dA | 2.72 | MC |
| SRR7265408 | coleoptile | 3dA | 1.57 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.46 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.90 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.03 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.82 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.82 | MC |
| SRR976168 | flag_leaf | wild_type | 0.50 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.90 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.30 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.31 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.37 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.42 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.38 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.43 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.45 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.38 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.00 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.56 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.90 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.99 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.06 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.96 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.28 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.56 | MC |
| SRR8240824 | leaf | wild_type | 0.70 | MC |
| SRR8240825 | leaf | wild_type | 0.77 | MC |
| SRR8240826 | leaf | wild_type | 0.37 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.83 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.74 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.32 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.38 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.91 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.99 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 3.59 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.39 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.91 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.99 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 3.59 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.39 | MC |
| SRR1761528 | leaf | drought | 3.91 | MC |
| SRR1761529 | leaf | drought | 2.99 | MC |
| SRR1761530 | leaf | control | 3.59 | MC |
| SRR1761531 | leaf | control | 5.39 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.97 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.02 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.55 | MC |
| SRR6417967 | leaf | H2O_control | 1.77 | MC |
| SRR6417968 | leaf | H2O_control | 1.79 | MC |
| SRR6417969 | leaf | H2O_control | 1.43 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.87 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.85 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.84 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.73 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.65 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.35 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.39 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.88 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.27 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.64 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.17 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.80 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 4.05 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.90 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 4.09 | MC |
| SRR6502088 | leaf | control | 3.38 | MC |
| SRR6502089 | leaf | control | 3.87 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.37 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.77 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.57 | MC |
| SRR6502100 | leaf | control | 3.18 | MC |
| SRR6502101 | leaf | control | 2.90 | MC |
| SRR6502102 | leaf | control | 2.75 | MC |
| SRR5856927 | leaf | control | 0.96 | MC |
| SRR5856928 | leaf | control | 0.99 | MC |
| SRR5856929 | leaf | control | 0.86 | MC |
| SRR5856930 | leaf | salt | 0.23 | MC |
| SRR5856931 | leaf | salt | 0.47 | MC |
| SRR5856932 | leaf | salt | 0.26 | MC |
| SRR5856933 | leaf | control | 1.16 | MC |
| SRR5856934 | leaf | control | 0.98 | MC |
| SRR5856935 | leaf | control | 1.15 | MC |
| SRR5856936 | leaf | salt | 0.59 | MC |
| SRR5856937 | leaf | salt | 0.80 | MC |
| SRR5856938 | leaf | salt | 0.74 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.32 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 0.95 | MC |
| SRR6168973 | leaf | none (control) | 1.40 | MC |
| SRR6168974 | leaf | none (control) | 2.00 | MC |
| SRR6168975 | leaf | none (control) | 1.36 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.94 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.31 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.23 | MC |
| SRR6168981 | leaf | none (control) | 0.23 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.27 | MC |
| SRR8582888 | panicle | AM | 0.60 | MC |
| SRR8582889 | panicle | AM | 0.19 | MC |
| SRR8582890 | panicle | AM | 0.52 | MC |
| SRR5110430 | panicle | Dawn | 2.75 | MC |
| SRR5110431 | panicle | Dawn | 4.02 | MC |
| SRR4947496 | root | control | 4.27 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 3.20 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.96 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.06 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 4.15 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.95 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.91 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.50 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 4.30 | MC |
| SRR5110458 | panicle | Dawn + 21h | 3.24 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.04 | MC |
| SRR1633182 | panicle | WT | 1.59 | MC |
| SRR1633185 | panicle | WT | 2.70 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.05 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.69 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.02 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.92 | MC |
| SRR5126157 | root | "mock,7_days" | 5.08 | MC |
| SRR5126167 | root | "mock,14_days" | 3.90 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.57 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.79 | MC |
| SRR1213694 | root | wt | 2.13 | MC |
| SRR4947478 | root | control | 2.99 | MC |
| SRR4947479 | root | control | 2.82 | MC |
| SRR4947482 | root | Al | 1.92 | MC |
| SRR4947483 | root | Al | 3.61 | MC |
| SRR4947485 | root | Al | 4.80 | MC |
| SRR4947487 | root | control | 2.05 | MC |
| SRR4947488 | root | control | 4.55 | MC |
| SRR4947489 | root | control | 4.78 | MC |
| SRR4947490 | root | Al | 3.21 | MC |
| SRR4947491 | root | Al | 4.61 | MC |
| SRR4947493 | root | Al | 3.65 | MC |
| SRR4947494 | root | control | 2.57 | MC |
| SRR4947497 | root | control | 5.05 | MC |
| SRR4947498 | root | Al | 4.10 | MC |
| SRR4947499 | root | Al | 4.51 | MC |
| SRR4947502 | root | control | 5.66 | MC |
| SRR4947503 | root | control | 4.33 | MC |
| SRR4947506 | root | Al | 3.23 | MC |
| SRR4947507 | root | Al | 5.01 | MC |
| SRR6502094 | root | control | 3.86 | MC |
| SRR6502095 | root | control | 4.34 | MC |
| SRR6502096 | root | control | 3.04 | MC |
| SRR6502106 | root | control | 4.24 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.84 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.81 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.57 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.55 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.49 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.83 | MC |
| SRR6441554 | seedling | wild_type | 2.30 | MC |
| SRR6441555 | seedling | wild_type | 1.36 | MC |
| SRR2154083 | seedling | wt | 2.71 | MC |
| SRR3098741 | seedling | wt | 1.70 | MC |
| SRR3098742 | seedling | wt | 2.29 | MC |
| SRR3098743 | seedling | wt | 1.48 | MC |
| SRR2857719 | seedling | drought_stress_0h | 4.06 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.48 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.40 | MC |
| SRR1944583 | seedling | no_treatment | 1.22 | MC |
| SRR358793 | seedling | wt | 4.75 | MC |
| SRR358794 | seedling | wt | 4.19 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.04 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.60 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.77 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.00 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.78 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.24 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.82 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.62 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.52 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.51 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.38 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.10 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.35 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.48 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.61 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.34 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.86 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.51 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.12 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.06 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.56 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.33 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.15 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.06 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.21 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.92 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.88 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.51 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.89 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.01 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.39 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.52 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.19 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.06 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.92 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.89 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 7.23 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 6.47 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 5.14 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.76 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 6.19 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 7.81 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 6.87 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 5.94 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 6.66 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 6.96 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 7.80 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 7.74 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 7.54 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 6.85 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 7.16 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 6.59 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 8.15 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 8.52 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 6.68 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 6.92 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 9.89 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 6.09 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 7.83 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 6.02 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.03 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.19 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 4.28 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.51 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.91 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.84 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.44 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.42 | MC |