| SRR4457249 | 2nd_leaf | DAH4 | 1.53 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.38 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.75 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.78 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.19 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.79 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.03 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.42 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.45 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.33 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.04 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 3.83 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.42 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.07 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.88 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.46 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.72 | MC |
| SRR5560727 | caryopsis | wild_type | 4.14 | MC |
| SRR4947495 | root | control | 3.55 | MC |
| SRR7265400 | coleoptile | 2dA | 2.94 | MC |
| SRR7265401 | coleoptile | 2dA | 3.18 | MC |
| SRR7265402 | coleoptile | 2dA | 3.51 | MC |
| SRR7265403 | coleoptile | 2dN | 1.43 | MC |
| SRR7265404 | coleoptile | 2dN | 1.14 | MC |
| SRR7265405 | coleoptile | 2dN | 1.46 | MC |
| SRR7265406 | coleoptile | 3dA | 2.37 | MC |
| SRR7265407 | coleoptile | 3dA | 2.26 | MC |
| SRR7265408 | coleoptile | 3dA | 1.20 | MC |
| SRR7265409 | coleoptile | 3dN | 2.34 | MC |
| SRR7265410 | coleoptile | 3dN | 2.17 | MC |
| SRR7265411 | coleoptile | 3dN | 1.58 | MC |
| SRR7265413 | coleoptile | 4dA | 2.79 | MC |
| SRR7265416 | coleoptile | 4dN | 1.50 | MC |
| SRR7265417 | coleoptile | 4dN | 1.86 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.57 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.66 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.10 | MC |
| SRR7265384 | embryo | 3hA | 0.35 | MC |
| SRR7265386 | embryo | 3hN | 0.46 | MC |
| SRR7265387 | embryo | 3hN | 0.26 | MC |
| SRR7265388 | embryo | 12hA | 1.15 | MC |
| SRR7265389 | embryo | 12hA | 0.98 | MC |
| SRR7265390 | embryo | 12hA | 1.65 | MC |
| SRR7265391 | embryo | 12hN | 0.61 | MC |
| SRR7265392 | embryo | 12hN | 0.87 | MC |
| SRR7265393 | embryo | 12hN | 0.46 | MC |
| SRR7265394 | embryo | 24hA | 1.01 | MC |
| SRR7265395 | embryo | 24hA | 1.55 | MC |
| SRR7265396 | embryo | 24hA | 2.28 | MC |
| SRR7265397 | embryo | 24hN | 1.21 | MC |
| SRR7265398 | embryo | 24hN | 0.99 | MC |
| SRR7265399 | embryo | 24hN | 0.52 | MC |
| SRR2338867 | endosprem | control | 0.69 | MC |
| SRR2338869 | endosprem | high_temperature | 0.89 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.23 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.68 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.63 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.42 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.53 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.52 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.71 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.56 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.83 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.55 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.78 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.55 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.86 | MC |
| SRR8060835 | leaf | wild_type | 2.05 | MC |
| SRR8060836 | leaf | wild_type | 2.41 | MC |
| SRR8060837 | leaf | wild_type | 1.34 | MC |
| SRR8240826 | leaf | wild_type | 0.93 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.76 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.37 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.70 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.45 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.31 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.88 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.74 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.37 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.12 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.02 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.62 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.35 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.81 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.84 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.54 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.32 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.65 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.39 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.67 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.29 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.42 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.74 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.93 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.05 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.11 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.70 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.21 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.93 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.35 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.76 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 4.01 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.10 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.59 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.38 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.27 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 5.88 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 3.82 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.38 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.27 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 5.88 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 3.82 | MC |
| SRR1761528 | leaf | drought | 2.38 | MC |
| SRR1761529 | leaf | drought | 2.27 | MC |
| SRR1761530 | leaf | control | 5.88 | MC |
| SRR1761531 | leaf | control | 3.82 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.82 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.21 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.85 | MC |
| SRR6417969 | leaf | H2O_control | 0.41 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.70 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.00 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.78 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.01 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.91 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.20 | MC |
| SRR1213692 | leaf | wt | 2.01 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.44 | MC |
| SRR6502088 | leaf | control | 3.05 | MC |
| SRR6502089 | leaf | control | 2.44 | MC |
| SRR6502090 | leaf | control | 1.43 | MC |
| SRR6502100 | leaf | control | 3.30 | MC |
| SRR6502101 | leaf | control | 2.45 | MC |
| SRR6502102 | leaf | control | 3.59 | MC |
| SRR5856927 | leaf | control | 0.76 | MC |
| SRR5856928 | leaf | control | 0.56 | MC |
| SRR5856929 | leaf | control | 0.55 | MC |
| SRR5856932 | leaf | salt | 1.44 | MC |
| SRR5856933 | leaf | control | 0.77 | MC |
| SRR5856934 | leaf | control | 1.66 | MC |
| SRR5856935 | leaf | control | 0.72 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 4.73 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.17 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.50 | MC |
| SRR6168975 | leaf | none (control) | 2.09 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.46 | MC |
| SRR6168980 | leaf | none (control) | 0.24 | MC |
| SRR6168981 | leaf | none (control) | 1.67 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.63 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.66 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.21 | MC |
| SRR8582888 | panicle | AM | 1.64 | MC |
| SRR8582889 | panicle | AM | 1.08 | MC |
| SRR8582891 | panicle | PM | 0.63 | MC |
| SRR8582892 | panicle | PM | 2.34 | MC |
| SRR8582893 | panicle | PM | 2.23 | MC |
| SRR4947496 | root | control | 3.73 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.44 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.89 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 3.16 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 4.50 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 4.55 | MC |
| SRR5126147 | root | "mock,1_day" | 2.94 | MC |
| SRR5126148 | root | "mock,1_day" | 2.22 | MC |
| SRR5126149 | root | "mock,1_day" | 1.58 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.13 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.51 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.37 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.82 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.62 | MC |
| SRR5126165 | root | "mock,14_days" | 2.49 | MC |
| SRR5126167 | root | "mock,14_days" | 2.56 | MC |
| SRR5126169 | root | "mock,14_days" | 4.10 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.45 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.55 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.29 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.91 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.55 | MC |
| SRR1213694 | root | wt | 0.48 | MC |
| SRR1213695 | root | wt | 2.13 | MC |
| SRR4947478 | root | control | 2.99 | MC |
| SRR4947479 | root | control | 2.90 | MC |
| SRR4947480 | root | control | 4.82 | MC |
| SRR4947481 | root | control | 3.33 | MC |
| SRR4947482 | root | Al | 3.08 | MC |
| SRR4947483 | root | Al | 2.99 | MC |
| SRR4947484 | root | Al | 4.87 | MC |
| SRR4947485 | root | Al | 4.58 | MC |
| SRR4947487 | root | control | 3.28 | MC |
| SRR4947490 | root | Al | 3.01 | MC |
| SRR4947491 | root | Al | 3.94 | MC |
| SRR4947494 | root | control | 3.83 | MC |
| SRR4947497 | root | control | 4.89 | MC |
| SRR4947499 | root | Al | 4.66 | MC |
| SRR4947502 | root | control | 4.19 | MC |
| SRR4947503 | root | control | 3.98 | MC |
| SRR4947504 | root | control | 3.60 | MC |
| SRR4947508 | root | Al | 4.00 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.46 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.88 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.51 | MC |
| SRR6502094 | root | control | 0.80 | MC |
| SRR6502095 | root | control | 1.48 | MC |
| SRR6502096 | root | control | 1.33 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.90 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.15 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.67 | MC |
| SRR6502106 | root | control | 1.66 | MC |
| SRR6502107 | root | control | 1.85 | MC |
| SRR6502108 | root | control | 0.88 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.70 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.85 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.38 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.77 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.05 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.80 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.48 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.66 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.29 | MC |
| SRR6441555 | seedling | wild_type | 2.47 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.42 | MC |
| SRR358791 | seedling | wt | 5.63 | MC |
| SRR358792 | seedling | wt | 5.83 | MC |
| SRR358793 | seedling | wt | 1.13 | MC |
| SRR358794 | seedling | wt | 1.08 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.51 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.84 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.44 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.56 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.65 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.44 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.68 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.39 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.44 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.91 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.48 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.61 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.17 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.75 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.48 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.54 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.49 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.10 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.27 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.12 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.12 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.10 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 8.21 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 12.80 | MC |