| SRR358796 | callus | wt | 1.01 | MC |
| SRR358797 | callus | wt | 1.46 | MC |
| SRR358798 | callus | wt | 1.08 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.85 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.44 | MC |
| SRR7265403 | coleoptile | 2dN | 0.89 | MC |
| SRR7265404 | coleoptile | 2dN | 1.03 | MC |
| SRR7265405 | coleoptile | 2dN | 1.01 | MC |
| SRR7265409 | coleoptile | 3dN | 0.68 | MC |
| SRR7265410 | coleoptile | 3dN | 1.00 | MC |
| SRR7265411 | coleoptile | 3dN | 0.61 | MC |
| SRR7265415 | coleoptile | 4dN | 0.82 | MC |
| SRR7265417 | coleoptile | 4dN | 0.69 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.90 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.13 | MC |
| SRR7265376 | embryo | 1hA | 2.08 | MC |
| SRR7265377 | embryo | 1hA | 3.40 | MC |
| SRR7265379 | embryo | 1hN | 3.28 | MC |
| SRR7265380 | embryo | 1hN | 3.48 | MC |
| SRR7265381 | embryo | 1hN | 2.53 | MC |
| SRR7265382 | embryo | 3hA | 2.98 | MC |
| SRR7265383 | embryo | 3hA | 2.69 | MC |
| SRR7265384 | embryo | 3hA | 3.47 | MC |
| SRR7265385 | embryo | 3hN | 3.49 | MC |
| SRR7265386 | embryo | 3hN | 3.23 | MC |
| SRR7265388 | embryo | 12hA | 1.64 | MC |
| SRR7265389 | embryo | 12hA | 1.43 | MC |
| SRR7265390 | embryo | 12hA | 0.66 | MC |
| SRR7265391 | embryo | 12hN | 2.14 | MC |
| SRR7265392 | embryo | 12hN | 1.16 | MC |
| SRR7265393 | embryo | 12hN | 1.82 | MC |
| SRR7265395 | embryo | 24hA | 0.48 | MC |
| SRR7265396 | embryo | 24hA | 0.54 | MC |
| SRR7265397 | embryo | 24hN | 1.63 | MC |
| SRR7265398 | embryo | 24hN | 1.81 | MC |
| SRR7265399 | embryo | 24hN | 2.07 | MC |
| SRR2338868 | endosprem | high_temperature | 0.44 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.71 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.40 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.34 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.38 | MC |
| SRR5856933 | leaf | control | 0.20 | MC |
| SRR6168979 | leaf | none (control) | 0.78 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.22 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.36 | MC |
| SRR5110429 | panicle | Dawn | 0.70 | MC |
| SRR5110430 | panicle | Dawn | 2.20 | MC |
| SRR5110431 | panicle | Dawn | 1.99 | MC |
| SRR5110432 | panicle | Dawn | 0.60 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.88 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.29 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.77 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.50 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.27 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.82 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.74 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.01 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.21 | MC |
| SRR5110445 | panicle | Dusk | 3.58 | MC |
| SRR5110446 | panicle | Dusk | 0.61 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.60 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.74 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.55 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.39 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.84 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.49 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.82 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.90 | MC |
| SRR1633182 | panicle | WT | 0.99 | MC |
| SRR1633185 | panicle | WT | 0.43 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.72 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.83 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.40 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.40 | MC |
| SRR4947501 | root | Al | 0.60 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.42 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.27 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.35 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.49 | MC |
| SRR1740433 | root_elongation_zone | wt | 3.38 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.89 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.10 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.60 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.20 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.84 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.78 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.86 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.32 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 3.96 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.60 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.47 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.22 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.59 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.34 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.49 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.28 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.48 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.62 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 3.42 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.03 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.45 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.35 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.59 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.91 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.20 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.86 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.56 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.50 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.35 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.06 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 4.14 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.30 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.49 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.82 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 4.21 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.72 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.83 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.14 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.87 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.47 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.33 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.53 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.46 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.02 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.53 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.83 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.42 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.47 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.85 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.24 | MC |