| SRR358795 | callus | wt | 4.21 | MC |
| SRR358796 | callus | wt | 4.05 | MC |
| SRR358797 | callus | wt | 6.46 | MC |
| SRR358798 | callus | wt | 5.82 | MC |
| SRR6320498 | carpel | wt | 3.72 | MC |
| SRR5560727 | caryopsis | wild_type | 0.31 | MC |
| SRR7265403 | coleoptile | 2dN | 0.51 | MC |
| SRR7265404 | coleoptile | 2dN | 0.70 | MC |
| SRR7265405 | coleoptile | 2dN | 0.44 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.26 | MC |
| SRR7265376 | embryo | 1hA | 1.36 | MC |
| SRR7265377 | embryo | 1hA | 2.31 | MC |
| SRR7265378 | embryo | 1hA | 1.45 | MC |
| SRR7265379 | embryo | 1hN | 0.47 | MC |
| SRR7265380 | embryo | 1hN | 0.65 | MC |
| SRR7265381 | embryo | 1hN | 0.80 | MC |
| SRR7265389 | embryo | 12hA | 1.65 | MC |
| SRR7265390 | embryo | 12hA | 1.48 | MC |
| SRR7265396 | embryo | 24hA | 0.49 | MC |
| SRR7265397 | embryo | 24hN | 1.03 | MC |
| SRR7265398 | embryo | 24hN | 2.35 | MC |
| SRR7265399 | embryo | 24hN | 2.23 | MC |
| SRR2338868 | endosprem | high_temperature | 1.53 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.71 | MC |
| SRR8060837 | leaf | wild_type | 0.32 | MC |
| SRR8240825 | leaf | wild_type | 0.30 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.06 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.05 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.75 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.91 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.79 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.20 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.56 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.27 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.22 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.17 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.19 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.20 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.83 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.41 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.47 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.62 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.81 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.93 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.19 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.43 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.14 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.46 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.85 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.89 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.26 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.66 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.78 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.71 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.45 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.31 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.31 | MC |
| SRR1761528 | leaf | drought | 1.31 | MC |
| SRR6417968 | leaf | H2O_control | 0.43 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.85 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.31 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.69 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.43 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.25 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.31 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.15 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.79 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.47 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.40 | MC |
| SRR5856927 | leaf | control | 0.66 | MC |
| SRR5856928 | leaf | control | 0.32 | MC |
| SRR5856929 | leaf | control | 0.26 | MC |
| SRR5856930 | leaf | salt | 1.28 | MC |
| SRR5856931 | leaf | salt | 1.32 | MC |
| SRR5856932 | leaf | salt | 1.58 | MC |
| SRR5856935 | leaf | control | 0.41 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 3.18 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.67 | MC |
| SRR6168973 | leaf | none (control) | 0.91 | MC |
| SRR6168974 | leaf | none (control) | 4.94 | MC |
| SRR6168981 | leaf | none (control) | 1.28 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.99 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.38 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.86 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.36 | MC |
| SRR5110446 | panicle | Dusk | 0.36 | MC |
| SRR5110448 | panicle | Dusk | 1.04 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.48 | MC |
| SRR5126147 | root | "mock,1_day" | 2.06 | MC |
| SRR5126148 | root | "mock,1_day" | 1.22 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.47 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.33 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.08 | MC |
| SRR5126155 | root | "mock,7_days" | 1.84 | MC |
| SRR5126157 | root | "mock,7_days" | 0.64 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.88 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.34 | MC |
| SRR5126165 | root | "mock,14_days" | 0.53 | MC |
| SRR5126167 | root | "mock,14_days" | 1.18 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.60 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.78 | MC |
| SRR4947478 | root | control | 0.76 | MC |
| SRR4947490 | root | Al | 0.87 | MC |
| SRR4947494 | root | control | 1.34 | MC |
| SRR4947506 | root | Al | 1.34 | MC |
| SRR2154086 | seedling | wt | 1.08 | MC |
| SRR2154082 | seedling | wt | 0.47 | MC |
| SRR2154083 | seedling | wt | 2.20 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.62 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.20 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.22 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.95 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.04 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.70 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.18 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.76 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.22 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.63 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.18 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.30 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.25 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.31 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.45 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.25 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 0.97 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.80 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.37 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.50 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.34 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.43 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.27 | MC |