| SRR358795 | callus | wt | 1.24 | MC |
| SRR358796 | callus | wt | 1.38 | MC |
| SRR358798 | callus | wt | 1.50 | MC |
| SRR6320473 | carpel | wt | 1.23 | MC |
| SRR5560728 | caryopsis | wild_type | 0.26 | MC |
| SRR5560729 | caryopsis | wild_type | 0.27 | MC |
| SRR7265400 | coleoptile | 2dA | 0.61 | MC |
| SRR7265401 | coleoptile | 2dA | 0.40 | MC |
| SRR7265402 | coleoptile | 2dA | 0.52 | MC |
| SRR7265403 | coleoptile | 2dN | 0.43 | MC |
| SRR7265404 | coleoptile | 2dN | 0.43 | MC |
| SRR7265411 | coleoptile | 3dN | 0.52 | MC |
| SRR7265416 | coleoptile | 4dN | 0.72 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.36 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.39 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.58 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.31 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.10 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.34 | MC |
| SRR7265389 | embryo | 12hA | 0.63 | MC |
| SRR7265390 | embryo | 12hA | 0.89 | MC |
| SRR7265393 | embryo | 12hN | 0.52 | MC |
| SRR7265395 | embryo | 24hA | 0.81 | MC |
| SRR7265396 | embryo | 24hA | 0.67 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.37 | MC |
| SRR1213691 | flower | wt | 0.63 | MC |
| SRR8240818 | leaf | wild_type | 0.27 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.24 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.39 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.31 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.33 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.50 | MC |
| SRR6502089 | leaf | control | 0.39 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.75 | MC |
| SRR6168973 | leaf | none (control) | 0.26 | MC |
| SRR5110432 | panicle | Dawn | 0.81 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.49 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.74 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.52 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.21 | MC |
| SRR1633182 | panicle | WT | 4.50 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.25 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.48 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.45 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.39 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.23 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.95 | MC |
| SRR5126147 | root | "mock,1_day" | 0.40 | MC |
| SRR5126149 | root | "mock,1_day" | 0.47 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.75 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.63 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.47 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.42 | MC |
| SRR5126169 | root | "mock,14_days" | 0.29 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.35 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.41 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.39 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.57 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.45 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.49 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.49 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.77 | MC |
| SRR6502108 | root | control | 0.49 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.39 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.68 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.48 | MC |
| SRR6441555 | seedling | wild_type | 0.25 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.51 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.00 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.52 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.12 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.04 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.54 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.23 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.34 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.06 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.51 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.33 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.33 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.10 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.52 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.70 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.44 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.27 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.02 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.32 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.70 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.69 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.32 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.76 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.76 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.00 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.37 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.80 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.47 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.69 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.49 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 4.22 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.80 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.20 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.46 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.97 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.22 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.78 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.68 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.10 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.36 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.69 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.57 | MC |