| SRR4457249 | 2nd_leaf | DAH4 | 5.07 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 3.99 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.83 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.74 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 3.54 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 5.19 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.02 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.11 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.07 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.17 | MC |
| SRR3745125 | anther | wt | 5.72 | MC |
| SRR3745127 | anther | wt | 4.70 | MC |
| SRR358795 | callus | wt | 5.92 | MC |
| SRR358796 | callus | wt | 4.87 | MC |
| SRR358797 | callus | wt | 6.29 | MC |
| SRR358798 | callus | wt | 5.30 | MC |
| SRR6320473 | carpel | wt | 1.38 | MC |
| SRR6320498 | carpel | wt | 2.74 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.90 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.59 | MC |
| SRR7265408 | coleoptile | 3dA | 2.83 | MC |
| SRR7265412 | coleoptile | 4dA | 2.52 | MC |
| SRR7265414 | coleoptile | 4dA | 2.95 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.49 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.40 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.37 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.34 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.47 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.91 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.37 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.08 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.57 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.50 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.97 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.56 | MC |
| SRR7265382 | embryo | 3hA | 4.31 | MC |
| SRR7265383 | embryo | 3hA | 3.75 | MC |
| SRR7265384 | embryo | 3hA | 3.70 | MC |
| SRR2338866 | endosprem | control | 3.15 | MC |
| SRR2338867 | endosprem | control | 2.14 | MC |
| SRR2338869 | endosprem | high_temperature | 2.66 | MC |
| SRR976168 | flag_leaf | wild_type | 2.01 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.38 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.67 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.89 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.78 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.09 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.28 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.93 | MC |
| SRR8060835 | leaf | wild_type | 1.47 | MC |
| SRR8060836 | leaf | wild_type | 2.89 | MC |
| SRR8060837 | leaf | wild_type | 1.86 | MC |
| SRR8240824 | leaf | wild_type | 1.79 | MC |
| SRR8240825 | leaf | wild_type | 1.12 | MC |
| SRR8240826 | leaf | wild_type | 1.20 | MC |
| SRR8240818 | leaf | wild_type | 1.01 | MC |
| SRR8240819 | leaf | wild_type | 1.15 | MC |
| SRR8240820 | leaf | wild_type | 1.23 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.98 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.00 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.06 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.38 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.37 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.31 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.03 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.95 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.31 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.54 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.93 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.50 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.46 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.34 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.90 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.72 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.47 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.78 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.85 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.41 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.79 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.07 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.85 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.41 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.80 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.06 | MC |
| SRR1761528 | leaf | drought | 3.85 | MC |
| SRR1761529 | leaf | drought | 3.42 | MC |
| SRR1761530 | leaf | control | 4.79 | MC |
| SRR1761531 | leaf | control | 4.07 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.03 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.47 | MC |
| SRR6417967 | leaf | H2O_control | 3.86 | MC |
| SRR6417968 | leaf | H2O_control | 3.55 | MC |
| SRR6417969 | leaf | H2O_control | 3.41 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 3.12 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 4.22 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.67 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.51 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.87 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.61 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.07 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.79 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.87 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.59 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.81 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.48 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.73 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.18 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.10 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.42 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.28 | MC |
| SRR6502088 | leaf | control | 2.09 | MC |
| SRR6502089 | leaf | control | 2.00 | MC |
| SRR6502090 | leaf | control | 2.10 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.89 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.81 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.86 | MC |
| SRR6502100 | leaf | control | 3.09 | MC |
| SRR6502101 | leaf | control | 2.22 | MC |
| SRR6502102 | leaf | control | 2.53 | MC |
| SRR5856927 | leaf | control | 1.18 | MC |
| SRR5856928 | leaf | control | 1.01 | MC |
| SRR5856929 | leaf | control | 1.24 | MC |
| SRR5856930 | leaf | salt | 1.13 | MC |
| SRR5856931 | leaf | salt | 1.18 | MC |
| SRR5856932 | leaf | salt | 1.46 | MC |
| SRR5856933 | leaf | control | 1.69 | MC |
| SRR5856934 | leaf | control | 1.27 | MC |
| SRR5856935 | leaf | control | 1.69 | MC |
| SRR5856937 | leaf | salt | 1.72 | MC |
| SRR6168973 | leaf | none (control) | 4.15 | MC |
| SRR6168974 | leaf | none (control) | 3.92 | MC |
| SRR6168975 | leaf | none (control) | 4.69 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.44 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.62 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.93 | MC |
| SRR6168979 | leaf | none (control) | 0.88 | MC |
| SRR6168980 | leaf | none (control) | 0.94 | MC |
| SRR6168981 | leaf | none (control) | 2.52 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.61 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.40 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.41 | MC |
| SRR8582888 | panicle | AM | 2.62 | MC |
| SRR8582889 | panicle | AM | 1.64 | MC |
| SRR8582891 | panicle | PM | 4.99 | MC |
| SRR8582892 | panicle | PM | 5.58 | MC |
| SRR8582893 | panicle | PM | 3.30 | MC |
| SRR5110430 | panicle | Dawn | 4.63 | MC |
| SRR5110432 | panicle | Dawn | 3.53 | MC |
| SRR4947496 | root | control | 2.91 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 3.77 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.22 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.29 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.52 | MC |
| SRR5110440 | panicle | Dawn + 7h | 5.13 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.30 | MC |
| SRR5110445 | panicle | Dusk | 3.71 | MC |
| SRR5110446 | panicle | Dusk | 3.97 | MC |
| SRR5110447 | panicle | Dusk | 4.14 | MC |
| SRR5110448 | panicle | Dusk | 5.19 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.17 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.16 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.95 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.20 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.74 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.34 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.85 | MC |
| SRR5110457 | panicle | Dawn + 21h | 3.38 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.99 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.26 | MC |
| SRR1633182 | panicle | WT | 4.59 | MC |
| SRR1633185 | panicle | WT | 4.92 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.51 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.13 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.35 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 4.28 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 6.65 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.26 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.52 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.88 | MC |
| SRR1213694 | root | wt | 2.40 | MC |
| SRR4947480 | root | control | 2.44 | MC |
| SRR4947481 | root | control | 4.33 | MC |
| SRR4947483 | root | Al | 0.42 | MC |
| SRR4947484 | root | Al | 3.81 | MC |
| SRR4947488 | root | control | 2.76 | MC |
| SRR4947489 | root | control | 3.19 | MC |
| SRR4947491 | root | Al | 1.27 | MC |
| SRR4947492 | root | Al | 3.47 | MC |
| SRR4947493 | root | Al | 3.32 | MC |
| SRR4947497 | root | control | 4.97 | MC |
| SRR4947500 | root | Al | 4.27 | MC |
| SRR4947501 | root | Al | 6.18 | MC |
| SRR4947502 | root | control | 1.77 | MC |
| SRR4947503 | root | control | 0.50 | MC |
| SRR4947504 | root | control | 3.94 | MC |
| SRR4947505 | root | control | 4.66 | MC |
| SRR4947506 | root | Al | 0.43 | MC |
| SRR4947507 | root | Al | 0.94 | MC |
| SRR4947508 | root | Al | 3.89 | MC |
| SRR4947509 | root | Al | 4.95 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.14 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.84 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.17 | MC |
| SRR6502094 | root | control | 2.77 | MC |
| SRR6502095 | root | control | 2.65 | MC |
| SRR6502096 | root | control | 2.36 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.99 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.56 | MC |
| SRR1740428 | root_meristematic_zone | wt | 3.49 | MC |
| SRR1740430 | root_meristematic_zone | wt | 3.39 | MC |
| SRR2154082 | seedling | wt | 1.35 | MC |
| SRR2154083 | seedling | wt | 1.86 | MC |
| SRR2154084 | seedling | wt | 1.67 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.30 | MC |
| SRR1944583 | seedling | no_treatment | 2.61 | MC |
| SRR358791 | seedling | wt | 4.55 | MC |
| SRR358792 | seedling | wt | 4.86 | MC |
| SRR358793 | seedling | wt | 3.27 | MC |
| SRR358794 | seedling | wt | 3.02 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.31 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.07 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.39 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.68 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.48 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.77 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.50 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.69 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.09 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.42 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.55 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.71 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.92 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.07 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.75 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.95 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.00 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.46 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.34 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.05 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.04 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 3.33 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.32 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.18 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.37 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.01 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.25 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.15 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.22 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.89 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 7.64 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 9.26 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 8.35 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 10.78 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 5.27 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 5.58 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.44 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.70 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 4.81 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 5.46 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.63 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 4.75 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.88 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.75 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.80 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.73 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.53 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.39 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.98 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.70 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.11 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.46 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.54 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.40 | MC |