| SRR4457250 | 2nd_leaf | DAH4 | 0.78 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.73 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.75 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.75 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.93 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.03 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.98 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.76 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.85 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.71 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.52 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.05 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.79 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.60 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.98 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.28 | MC |
| SRR5560727 | caryopsis | wild_type | 4.67 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.72 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.30 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.32 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.04 | MC |
| SRR7265402 | coleoptile | 2dA | 2.61 | MC |
| SRR7265403 | coleoptile | 2dN | 3.05 | MC |
| SRR7265405 | coleoptile | 2dN | 2.02 | MC |
| SRR7265406 | coleoptile | 3dA | 2.75 | MC |
| SRR7265409 | coleoptile | 3dN | 2.89 | MC |
| SRR7265410 | coleoptile | 3dN | 3.06 | MC |
| SRR7265411 | coleoptile | 3dN | 2.64 | MC |
| SRR7265412 | coleoptile | 4dA | 1.08 | MC |
| SRR7265413 | coleoptile | 4dA | 2.32 | MC |
| SRR7265414 | coleoptile | 4dA | 2.19 | MC |
| SRR7265415 | coleoptile | 4dN | 1.98 | MC |
| SRR7265416 | coleoptile | 4dN | 3.58 | MC |
| SRR7265417 | coleoptile | 4dN | 1.61 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 4.01 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.53 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.90 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.68 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.87 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.02 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.59 | MC |
| SRR7265376 | embryo | 1hA | 1.04 | MC |
| SRR7265377 | embryo | 1hA | 2.47 | MC |
| SRR7265378 | embryo | 1hA | 0.99 | MC |
| SRR7265379 | embryo | 1hN | 1.73 | MC |
| SRR7265380 | embryo | 1hN | 1.56 | MC |
| SRR7265381 | embryo | 1hN | 1.25 | MC |
| SRR7265382 | embryo | 3hA | 1.17 | MC |
| SRR7265383 | embryo | 3hA | 1.04 | MC |
| SRR7265384 | embryo | 3hA | 0.98 | MC |
| SRR7265385 | embryo | 3hN | 1.25 | MC |
| SRR7265386 | embryo | 3hN | 0.86 | MC |
| SRR7265387 | embryo | 3hN | 1.03 | MC |
| SRR7265388 | embryo | 12hA | 4.51 | MC |
| SRR7265389 | embryo | 12hA | 2.43 | MC |
| SRR7265390 | embryo | 12hA | 2.52 | MC |
| SRR7265391 | embryo | 12hN | 3.56 | MC |
| SRR7265393 | embryo | 12hN | 2.11 | MC |
| SRR7265394 | embryo | 24hA | 4.58 | MC |
| SRR7265396 | embryo | 24hA | 4.27 | MC |
| SRR7265397 | embryo | 24hN | 4.29 | MC |
| SRR7265398 | embryo | 24hN | 1.92 | MC |
| SRR7265399 | embryo | 24hN | 3.72 | MC |
| SRR976168 | flag_leaf | wild_type | 0.41 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.36 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.48 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.53 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.40 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.03 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.03 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.93 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.29 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.43 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.61 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.71 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.63 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.03 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.19 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.73 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.95 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.44 | MC |
| SRR8060837 | leaf | wild_type | 0.20 | MC |
| SRR8240824 | leaf | wild_type | 0.52 | MC |
| SRR8240825 | leaf | wild_type | 0.24 | MC |
| SRR8240820 | leaf | wild_type | 0.31 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.52 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.22 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.69 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.44 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.72 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.03 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.51 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.62 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.63 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.67 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.38 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.93 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.63 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.65 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.84 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.87 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.78 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.13 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.64 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.62 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.11 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.91 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.30 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.59 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.64 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.85 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.04 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.15 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.50 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.55 | MC |
| SRR504365 | leaf | wt | 0.98 | MC |
| SRR6417968 | leaf | H2O_control | 0.49 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.43 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.46 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.56 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.98 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.73 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.93 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.46 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.60 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.84 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.43 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.58 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.35 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.91 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.72 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.74 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.56 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.44 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.34 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.40 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.25 | MC |
| SRR1213693 | leaf | wt | 0.46 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.04 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.90 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.63 | MC |
| SRR6502088 | leaf | control | 1.62 | MC |
| SRR6502089 | leaf | control | 1.22 | MC |
| SRR6502090 | leaf | control | 1.36 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.97 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.98 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.34 | MC |
| SRR6502100 | leaf | control | 3.11 | MC |
| SRR6502101 | leaf | control | 1.86 | MC |
| SRR6502102 | leaf | control | 2.78 | MC |
| SRR5856929 | leaf | control | 0.16 | MC |
| SRR5856930 | leaf | salt | 0.20 | MC |
| SRR5856937 | leaf | salt | 0.20 | MC |
| SRR5856938 | leaf | salt | 0.23 | MC |
| SRR6168973 | leaf | none (control) | 0.98 | MC |
| SRR6168974 | leaf | none (control) | 0.82 | MC |
| SRR6168975 | leaf | none (control) | 0.74 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.37 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.57 | MC |
| SRR6168981 | leaf | none (control) | 0.34 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.25 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.19 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.25 | MC |
| SRR8582888 | panicle | AM | 0.51 | MC |
| SRR8582889 | panicle | AM | 0.35 | MC |
| SRR8582890 | panicle | AM | 0.89 | MC |
| SRR8582891 | panicle | PM | 1.28 | MC |
| SRR8582892 | panicle | PM | 1.15 | MC |
| SRR8582893 | panicle | PM | 0.96 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.22 | MC |
| SRR1633182 | panicle | WT | 4.72 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.72 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.64 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.05 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.60 | MC |
| SRR1213695 | root | wt | 0.47 | MC |
| SRR6502095 | root | control | 4.84 | MC |
| SRR6441554 | seedling | wild_type | 1.63 | MC |
| SRR6441555 | seedling | wild_type | 0.71 | MC |
| SRR2154084 | seedling | wt | 1.55 | MC |
| SRR2154085 | seedling | wt | 1.80 | MC |
| SRR3098741 | seedling | wt | 1.22 | MC |
| SRR3098742 | seedling | wt | 0.95 | MC |
| SRR3098743 | seedling | wt | 1.09 | MC |
| SRR2857719 | seedling | drought_stress_0h | 4.21 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.58 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.53 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 4.25 | MC |
| SRR1944583 | seedling | no_treatment | 0.99 | MC |
| SRR358792 | seedling | wt | 0.78 | MC |
| SRR358793 | seedling | wt | 0.58 | MC |
| SRR358794 | seedling | wt | 0.48 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.30 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.41 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.73 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.60 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.99 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.06 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.77 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.55 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.51 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.92 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.53 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.90 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.84 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.87 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.50 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.36 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.50 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.33 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.43 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.93 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.85 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.27 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.98 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.90 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.72 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.72 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.85 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.12 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.30 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.36 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.65 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.56 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.51 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.66 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.63 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.03 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.52 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.51 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.34 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.94 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.36 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.15 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.76 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.60 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.08 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.89 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.35 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.71 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.17 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.19 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.66 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.63 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 7.30 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 6.00 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.00 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.73 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.80 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 4.32 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 4.19 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.67 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.71 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.18 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.98 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.42 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.76 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.21 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.40 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.51 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.51 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.95 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.30 | MC |