| SRR4457250 | 2nd_leaf | DAH4 | 4.43 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.95 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 3.59 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.89 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 4.09 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.98 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 3.66 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.25 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.96 | MC |
| SRR358796 | callus | wt | 9.39 | MC |
| SRR6320473 | carpel | wt | 1.13 | MC |
| SRR6320498 | carpel | wt | 2.94 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.53 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.79 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.59 | MC |
| SRR4947495 | root | control | 0.64 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.48 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.70 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.41 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.11 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.03 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.15 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.37 | MC |
| SRR2338866 | endosprem | control | 3.38 | MC |
| SRR2338867 | endosprem | control | 1.32 | MC |
| SRR2338868 | endosprem | high_temperature | 1.02 | MC |
| SRR2338869 | endosprem | high_temperature | 2.82 | MC |
| SRR4457231 | flag_leaf | DAH4 | 3.10 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.25 | MC |
| SRR4457233 | flag_leaf | DAH4 | 3.08 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.55 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.73 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.18 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.44 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.90 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.67 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.74 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.34 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.59 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.09 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.21 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.90 | MC |
| SRR4457247 | flag_leaf | DAH44 | 5.30 | MC |
| SRR4457248 | flag_leaf | DAH44 | 4.05 | MC |
| SRR8240824 | leaf | wild_type | 1.75 | MC |
| SRR8240826 | leaf | wild_type | 0.93 | MC |
| SRR8240818 | leaf | wild_type | 1.41 | MC |
| SRR8240819 | leaf | wild_type | 1.91 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.26 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.03 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.57 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.50 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.43 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.67 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.77 | MC |
| SRR6417967 | leaf | H2O_control | 1.84 | MC |
| SRR6417968 | leaf | H2O_control | 3.53 | MC |
| SRR6417969 | leaf | H2O_control | 2.83 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.26 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.82 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.39 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.96 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.57 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.65 | MC |
| SRR6502088 | leaf | control | 0.94 | MC |
| SRR6502089 | leaf | control | 0.78 | MC |
| SRR6502090 | leaf | control | 0.68 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.98 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.06 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.22 | MC |
| SRR6502100 | leaf | control | 0.98 | MC |
| SRR6502101 | leaf | control | 1.02 | MC |
| SRR6502102 | leaf | control | 1.19 | MC |
| SRR5856927 | leaf | control | 0.70 | MC |
| SRR5856928 | leaf | control | 0.64 | MC |
| SRR5856929 | leaf | control | 1.28 | MC |
| SRR5856930 | leaf | salt | 0.19 | MC |
| SRR5856931 | leaf | salt | 0.66 | MC |
| SRR5856932 | leaf | salt | 0.50 | MC |
| SRR5856933 | leaf | control | 1.39 | MC |
| SRR5856934 | leaf | control | 0.71 | MC |
| SRR5856935 | leaf | control | 1.03 | MC |
| SRR5856936 | leaf | salt | 0.72 | MC |
| SRR5856937 | leaf | salt | 0.60 | MC |
| SRR5856938 | leaf | salt | 0.43 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.56 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.69 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 5.75 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.20 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.69 | MC |
| SRR8582888 | panicle | AM | 2.59 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.34 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.69 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.77 | MC |
| SRR5110449 | panicle | Dawn + 14h | 6.09 | MC |
| SRR5110450 | panicle | Dawn + 14h | 4.15 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.37 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.29 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.61 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.92 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 4.07 | MC |
| SRR5126147 | root | "mock,1_day" | 2.11 | MC |
| SRR5126148 | root | "mock,1_day" | 1.13 | MC |
| SRR5126149 | root | "mock,1_day" | 2.63 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.57 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.44 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.73 | MC |
| SRR5126153 | root | "mock,7_days" | 2.90 | MC |
| SRR5126155 | root | "mock,7_days" | 3.43 | MC |
| SRR5126157 | root | "mock,7_days" | 4.31 | MC |
| SRR5126165 | root | "mock,14_days" | 3.00 | MC |
| SRR5126167 | root | "mock,14_days" | 3.41 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.43 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.45 | MC |
| SRR4947478 | root | control | 1.43 | MC |
| SRR4947479 | root | control | 1.86 | MC |
| SRR4947482 | root | Al | 1.25 | MC |
| SRR4947483 | root | Al | 1.42 | MC |
| SRR4947487 | root | control | 1.67 | MC |
| SRR4947490 | root | Al | 1.78 | MC |
| SRR4947491 | root | Al | 2.64 | MC |
| SRR4947494 | root | control | 1.97 | MC |
| SRR4947498 | root | Al | 2.85 | MC |
| SRR4947499 | root | Al | 1.32 | MC |
| SRR4947502 | root | control | 5.30 | MC |
| SRR4947503 | root | control | 1.90 | MC |
| SRR4947506 | root | Al | 2.36 | MC |
| SRR4947507 | root | Al | 3.56 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.81 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.31 | MC |
| SRR6502094 | root | control | 0.39 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.92 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.69 | MC |
| SRR6502106 | root | control | 0.55 | MC |
| SRR6502107 | root | control | 0.90 | MC |
| SRR6502108 | root | control | 0.65 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.07 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.35 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.27 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.61 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.32 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.11 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.70 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.97 | MC |
| SRR1740430 | root_meristematic_zone | wt | 3.24 | MC |
| SRR3098741 | seedling | wt | 2.12 | MC |
| SRR3098742 | seedling | wt | 2.80 | MC |
| SRR3098743 | seedling | wt | 1.84 | MC |
| SRR2857719 | seedling | drought_stress_0h | 4.31 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.98 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.88 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.92 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.00 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.04 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.07 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.09 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.48 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.22 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 10.19 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 5.33 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.85 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 6.32 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 5.27 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 4.25 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.93 | MC |