| SRR5560729 | caryopsis | wild_type | 4.82 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.73 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.41 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.72 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.67 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.35 | MC |
| SRR7265391 | embryo | 12hN | 1.14 | MC |
| SRR7265392 | embryo | 12hN | 0.67 | MC |
| SRR7265393 | embryo | 12hN | 0.89 | MC |
| SRR2338866 | endosprem | control | 2.08 | MC |
| SRR2338867 | endosprem | control | 1.63 | MC |
| SRR976168 | flag_leaf | wild_type | 1.44 | MC |
| SRR8240818 | leaf | wild_type | 0.29 | MC |
| SRR8240819 | leaf | wild_type | 1.72 | MC |
| SRR8240820 | leaf | wild_type | 1.37 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.37 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.48 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.34 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.23 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.20 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.39 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.91 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.58 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.31 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.82 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.86 | MC |
| SRR6502101 | leaf | control | 3.94 | MC |
| SRR6502102 | leaf | control | 4.43 | MC |
| SRR5856929 | leaf | control | 0.20 | MC |
| SRR5856930 | leaf | salt | 1.20 | MC |
| SRR5856931 | leaf | salt | 1.82 | MC |
| SRR5856932 | leaf | salt | 0.37 | MC |
| SRR5856933 | leaf | control | 0.73 | MC |
| SRR5856934 | leaf | control | 0.21 | MC |
| SRR5856935 | leaf | control | 0.44 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.66 | MC |
| SRR6168980 | leaf | none (control) | 0.54 | MC |
| SRR8582890 | panicle | AM | 2.13 | MC |
| SRR8582892 | panicle | PM | 6.28 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.42 | MC |
| SRR1633182 | panicle | WT | 0.29 | MC |
| SRR1633185 | panicle | WT | 0.65 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.47 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.49 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.06 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.71 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.52 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.46 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.48 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.62 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.29 | MC |
| SRR6441554 | seedling | wild_type | 0.75 | MC |
| SRR6441555 | seedling | wild_type | 0.82 | MC |
| SRR2154086 | seedling | wt | 1.18 | MC |
| SRR2154085 | seedling | wt | 1.35 | MC |
| SRR2154087 | seedling | wt | 1.25 | MC |
| SRR3098741 | seedling | wt | 2.65 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.37 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.11 | MC |
| SRR1944583 | seedling | no_treatment | 1.34 | MC |
| SRR358791 | seedling | wt | 2.12 | MC |
| SRR358792 | seedling | wt | 1.54 | MC |
| SRR358793 | seedling | wt | 2.86 | MC |
| SRR358794 | seedling | wt | 3.63 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.03 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.61 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.59 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.55 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.09 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.72 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.55 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.07 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.35 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.57 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.79 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.96 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.68 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.73 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.43 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.85 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.84 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.53 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.40 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.42 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.53 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.01 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.04 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.41 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.59 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.30 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.00 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.47 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.26 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.75 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.62 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.40 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.36 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.01 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.21 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.64 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.63 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.76 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.75 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.85 | MC |