| SRR358797 | callus | wt | 8.98 | MC |
| SRR6320473 | carpel | wt | 4.58 | MC |
| SRR6320498 | carpel | wt | 4.30 | MC |
| SRR4947495 | root | control | 3.95 | MC |
| SRR7265400 | coleoptile | 2dA | 0.42 | MC |
| SRR7265401 | coleoptile | 2dA | 0.63 | MC |
| SRR7265402 | coleoptile | 2dA | 0.42 | MC |
| SRR7265403 | coleoptile | 2dN | 1.89 | MC |
| SRR7265404 | coleoptile | 2dN | 1.11 | MC |
| SRR7265405 | coleoptile | 2dN | 1.61 | MC |
| SRR7265409 | coleoptile | 3dN | 2.05 | MC |
| SRR7265410 | coleoptile | 3dN | 1.32 | MC |
| SRR7265411 | coleoptile | 3dN | 2.53 | MC |
| SRR7265415 | coleoptile | 4dN | 1.30 | MC |
| SRR7265416 | coleoptile | 4dN | 2.98 | MC |
| SRR7265417 | coleoptile | 4dN | 2.15 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.12 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.79 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.73 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.90 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.18 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.45 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.31 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.46 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.49 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.51 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.17 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.89 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.81 | MC |
| SRR7265377 | embryo | 1hA | 0.64 | MC |
| SRR7265378 | embryo | 1hA | 0.32 | MC |
| SRR7265381 | embryo | 1hN | 0.60 | MC |
| SRR7265384 | embryo | 3hA | 0.45 | MC |
| SRR7265386 | embryo | 3hN | 0.34 | MC |
| SRR7265388 | embryo | 12hA | 0.65 | MC |
| SRR7265389 | embryo | 12hA | 0.48 | MC |
| SRR7265390 | embryo | 12hA | 0.91 | MC |
| SRR7265391 | embryo | 12hN | 0.46 | MC |
| SRR7265392 | embryo | 12hN | 1.21 | MC |
| SRR7265393 | embryo | 12hN | 1.71 | MC |
| SRR7265394 | embryo | 24hA | 0.96 | MC |
| SRR7265396 | embryo | 24hA | 0.79 | MC |
| SRR7265397 | embryo | 24hN | 1.05 | MC |
| SRR7265398 | embryo | 24hN | 1.49 | MC |
| SRR7265399 | embryo | 24hN | 2.56 | MC |
| SRR2338866 | endosprem | control | 2.58 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.61 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.84 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.34 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.29 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.24 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.04 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.22 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.35 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.95 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.73 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.33 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.99 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.11 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.59 | MC |
| SRR5856927 | leaf | control | 0.41 | MC |
| SRR5856930 | leaf | salt | 0.64 | MC |
| SRR5856931 | leaf | salt | 0.42 | MC |
| SRR5856933 | leaf | control | 0.67 | MC |
| SRR5856934 | leaf | control | 0.19 | MC |
| SRR5856935 | leaf | control | 0.48 | MC |
| SRR5856936 | leaf | salt | 0.47 | MC |
| SRR5856938 | leaf | salt | 0.22 | MC |
| SRR6168974 | leaf | none (control) | 0.39 | MC |
| SRR6168979 | leaf | none (control) | 0.26 | MC |
| SRR8582888 | panicle | AM | 1.50 | MC |
| SRR8582889 | panicle | AM | 1.26 | MC |
| SRR8582891 | panicle | PM | 1.52 | MC |
| SRR8582892 | panicle | PM | 1.87 | MC |
| SRR8582893 | panicle | PM | 0.72 | MC |
| SRR5110432 | panicle | Dawn | 2.65 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.88 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 4.07 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.38 | MC |
| SRR1633182 | panicle | WT | 1.98 | MC |
| SRR1633185 | panicle | WT | 3.62 | MC |
| SRR5126147 | root | "mock,1_day" | 2.17 | MC |
| SRR5126148 | root | "mock,1_day" | 1.61 | MC |
| SRR5126149 | root | "mock,1_day" | 0.45 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.67 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.42 | MC |
| SRR5126153 | root | "mock,7_days" | 0.76 | MC |
| SRR5126155 | root | "mock,7_days" | 1.26 | MC |
| SRR5126157 | root | "mock,7_days" | 0.58 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.51 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.53 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.94 | MC |
| SRR5126167 | root | "mock,14_days" | 0.95 | MC |
| SRR5126169 | root | "mock,14_days" | 0.91 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.43 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.57 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.67 | MC |
| SRR4947478 | root | control | 3.16 | MC |
| SRR4947479 | root | control | 3.76 | MC |
| SRR4947480 | root | control | 1.49 | MC |
| SRR4947481 | root | control | 1.18 | MC |
| SRR4947482 | root | Al | 2.30 | MC |
| SRR4947483 | root | Al | 3.81 | MC |
| SRR4947484 | root | Al | 1.28 | MC |
| SRR4947485 | root | Al | 1.17 | MC |
| SRR4947487 | root | control | 3.92 | MC |
| SRR4947488 | root | control | 1.24 | MC |
| SRR4947489 | root | control | 3.36 | MC |
| SRR4947490 | root | Al | 2.38 | MC |
| SRR4947491 | root | Al | 3.09 | MC |
| SRR4947493 | root | Al | 1.06 | MC |
| SRR4947497 | root | control | 1.98 | MC |
| SRR4947498 | root | Al | 3.75 | MC |
| SRR4947499 | root | Al | 3.63 | MC |
| SRR4947500 | root | Al | 1.12 | MC |
| SRR4947501 | root | Al | 2.08 | MC |
| SRR4947504 | root | control | 1.61 | MC |
| SRR4947505 | root | control | 3.31 | MC |
| SRR4947508 | root | Al | 1.45 | MC |
| SRR4947509 | root | Al | 1.69 | MC |
| SRR6502095 | root | control | 0.84 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.79 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.97 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.96 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.32 | MC |
| SRR2154086 | seedling | wt | 1.14 | MC |
| SRR2154083 | seedling | wt | 2.14 | MC |
| SRR2154084 | seedling | wt | 1.77 | MC |
| SRR2154085 | seedling | wt | 0.79 | MC |
| SRR2154087 | seedling | wt | 0.64 | MC |
| SRR3098741 | seedling | wt | 0.18 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.98 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.27 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.69 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.91 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.04 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.21 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.80 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.65 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.39 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.40 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.51 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.76 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.62 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.64 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.43 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.55 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.49 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.66 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.37 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.36 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.11 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.52 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.51 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.72 | MC |