| SRR4457264 | 2nd_leaf | DAH44 | 5.74 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 3.67 | MC |
| SRR5560727 | caryopsis | wild_type | 1.01 | MC |
| SRR5560728 | caryopsis | wild_type | 0.47 | MC |
| SRR5560729 | caryopsis | wild_type | 0.43 | MC |
| SRR7265400 | coleoptile | 2dA | 0.37 | MC |
| SRR7265402 | coleoptile | 2dA | 0.51 | MC |
| SRR7265403 | coleoptile | 2dN | 0.40 | MC |
| SRR7265404 | coleoptile | 2dN | 0.58 | MC |
| SRR7265405 | coleoptile | 2dN | 0.71 | MC |
| SRR7265411 | coleoptile | 3dN | 0.51 | MC |
| SRR7265417 | coleoptile | 4dN | 0.58 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.45 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.77 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.08 | MC |
| SRR7265388 | embryo | 12hA | 4.57 | MC |
| SRR7265389 | embryo | 12hA | 4.79 | MC |
| SRR7265390 | embryo | 12hA | 4.23 | MC |
| SRR7265394 | embryo | 24hA | 1.32 | MC |
| SRR7265395 | embryo | 24hA | 0.97 | MC |
| SRR7265396 | embryo | 24hA | 1.25 | MC |
| SRR7265397 | embryo | 24hN | 1.38 | MC |
| SRR7265398 | embryo | 24hN | 1.53 | MC |
| SRR7265399 | embryo | 24hN | 1.07 | MC |
| SRR976168 | flag_leaf | wild_type | 1.65 | MC |
| SRR4457247 | flag_leaf | DAH44 | 3.65 | MC |
| SRR4457248 | flag_leaf | DAH44 | 5.58 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.35 | MC |
| SRR8060835 | leaf | wild_type | 0.53 | MC |
| SRR8060836 | leaf | wild_type | 0.90 | MC |
| SRR8060837 | leaf | wild_type | 0.73 | MC |
| SRR8240818 | leaf | wild_type | 1.56 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.53 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.10 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.14 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.47 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.04 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.37 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.44 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.25 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.58 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.52 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.24 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.88 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.55 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.67 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.56 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.98 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.59 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.07 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.73 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.57 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.77 | MC |
| SRR504365 | leaf | wt | 0.24 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.23 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.43 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.01 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.35 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.58 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.84 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.16 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.90 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.36 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.60 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.17 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.02 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.31 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.46 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.35 | MC |
| SRR1213692 | leaf | wt | 1.13 | MC |
| SRR1213693 | leaf | wt | 0.57 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.55 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.06 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.28 | MC |
| SRR6502088 | leaf | control | 0.88 | MC |
| SRR6502090 | leaf | control | 0.53 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.68 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.03 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.99 | MC |
| SRR6502100 | leaf | control | 0.59 | MC |
| SRR6502101 | leaf | control | 0.92 | MC |
| SRR6502102 | leaf | control | 0.77 | MC |
| SRR5856928 | leaf | control | 2.16 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 7.09 | MC |
| SRR6168973 | leaf | none (control) | 0.42 | MC |
| SRR6168974 | leaf | none (control) | 1.02 | MC |
| SRR6168975 | leaf | none (control) | 0.49 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.46 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.39 | MC |
| SRR6168979 | leaf | none (control) | 1.12 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.23 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.57 | MC |
| SRR8582888 | panicle | AM | 2.66 | MC |
| SRR8582889 | panicle | AM | 1.41 | MC |
| SRR8582890 | panicle | AM | 1.86 | MC |
| SRR5110429 | panicle | Dawn | 2.08 | MC |
| SRR5110430 | panicle | Dawn | 5.21 | MC |
| SRR5110431 | panicle | Dawn | 1.77 | MC |
| SRR5110432 | panicle | Dawn | 0.63 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.01 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.14 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.76 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.66 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.66 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.77 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.71 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.85 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.53 | MC |
| SRR1633182 | panicle | WT | 0.40 | MC |
| SRR1633185 | panicle | WT | 0.45 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.35 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.34 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.57 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.62 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.96 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.43 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.44 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.11 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.35 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.76 | MC |
| SRR1213695 | root | wt | 1.92 | MC |
| SRR6441554 | seedling | wild_type | 0.75 | MC |
| SRR6441555 | seedling | wild_type | 2.36 | MC |
| SRR2154086 | seedling | wt | 1.19 | MC |
| SRR2154083 | seedling | wt | 1.89 | MC |
| SRR2154084 | seedling | wt | 1.11 | MC |
| SRR2154085 | seedling | wt | 2.83 | MC |
| SRR2154087 | seedling | wt | 2.05 | MC |
| SRR3098741 | seedling | wt | 0.25 | MC |
| SRR3098742 | seedling | wt | 0.30 | MC |
| SRR3098743 | seedling | wt | 0.28 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.53 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.02 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.15 | MC |
| SRR358791 | seedling | wt | 0.60 | MC |
| SRR358792 | seedling | wt | 0.91 | MC |
| SRR358793 | seedling | wt | 1.19 | MC |
| SRR358794 | seedling | wt | 1.02 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.52 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.12 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.19 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.65 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.73 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.27 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.69 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.73 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.26 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.62 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.51 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.32 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.85 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.81 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.74 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 4.09 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.78 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.65 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.33 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.97 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.20 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.56 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.73 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.46 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.33 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.02 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.49 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.65 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.87 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.64 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.40 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.47 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.64 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.78 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.62 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.77 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.83 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.65 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.76 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.01 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.70 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.22 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.99 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.49 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.52 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.44 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.47 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.87 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.48 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.25 | MC |