| SRR4457257 | 2nd_leaf | DAH20 | 0.43 | MC |
| SRR5560728 | caryopsis | wild_type | 0.41 | MC |
| SRR5560729 | caryopsis | wild_type | 0.92 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.11 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.75 | MC |
| SRR4947495 | root | control | 2.58 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.40 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.91 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.03 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.61 | MC |
| SRR7265376 | embryo | 1hA | 1.20 | MC |
| SRR7265377 | embryo | 1hA | 1.12 | MC |
| SRR7265378 | embryo | 1hA | 1.33 | MC |
| SRR7265379 | embryo | 1hN | 1.44 | MC |
| SRR7265380 | embryo | 1hN | 3.31 | MC |
| SRR7265381 | embryo | 1hN | 2.46 | MC |
| SRR2338867 | endosprem | control | 1.61 | MC |
| SRR2338868 | endosprem | high_temperature | 0.95 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.93 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.43 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.44 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.77 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.42 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.73 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.41 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.80 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.41 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.78 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.83 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.45 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.71 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.01 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.57 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.20 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.71 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.76 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.26 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.86 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.47 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.36 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.52 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.66 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.42 | MC |
| SRR5856927 | leaf | control | 1.83 | MC |
| SRR5856928 | leaf | control | 1.11 | MC |
| SRR5856929 | leaf | control | 0.91 | MC |
| SRR5856930 | leaf | salt | 0.57 | MC |
| SRR5856931 | leaf | salt | 1.30 | MC |
| SRR5856932 | leaf | salt | 1.58 | MC |
| SRR5856933 | leaf | control | 1.10 | MC |
| SRR5856934 | leaf | control | 1.22 | MC |
| SRR5856935 | leaf | control | 0.92 | MC |
| SRR5856936 | leaf | salt | 0.29 | MC |
| SRR5856937 | leaf | salt | 0.19 | MC |
| SRR5856938 | leaf | salt | 0.79 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.74 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 5.64 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 5.78 | MC |
| SRR6168975 | leaf | none (control) | 0.36 | MC |
| SRR6168980 | leaf | none (control) | 0.31 | MC |
| SRR6168981 | leaf | none (control) | 0.30 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.32 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.27 | MC |
| SRR4947496 | root | control | 0.85 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.28 | MC |
| SRR5126147 | root | "mock,1_day" | 0.31 | MC |
| SRR5126148 | root | "mock,1_day" | 0.33 | MC |
| SRR5126149 | root | "mock,1_day" | 0.92 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.91 | MC |
| SRR5126153 | root | "mock,7_days" | 0.61 | MC |
| SRR5126155 | root | "mock,7_days" | 0.66 | MC |
| SRR5126157 | root | "mock,7_days" | 1.39 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.58 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.28 | MC |
| SRR5126165 | root | "mock,14_days" | 2.68 | MC |
| SRR5126167 | root | "mock,14_days" | 0.84 | MC |
| SRR5126169 | root | "mock,14_days" | 0.95 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.01 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.83 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.88 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.49 | MC |
| SRR1213694 | root | wt | 1.67 | MC |
| SRR4947478 | root | control | 3.00 | MC |
| SRR4947479 | root | control | 2.05 | MC |
| SRR4947480 | root | control | 1.21 | MC |
| SRR4947481 | root | control | 1.54 | MC |
| SRR4947482 | root | Al | 1.30 | MC |
| SRR4947483 | root | Al | 1.51 | MC |
| SRR4947485 | root | Al | 0.84 | MC |
| SRR4947487 | root | control | 3.77 | MC |
| SRR4947488 | root | control | 1.66 | MC |
| SRR4947489 | root | control | 1.41 | MC |
| SRR4947490 | root | Al | 1.03 | MC |
| SRR4947491 | root | Al | 1.99 | MC |
| SRR4947492 | root | Al | 1.08 | MC |
| SRR4947494 | root | control | 3.50 | MC |
| SRR4947497 | root | control | 2.41 | MC |
| SRR4947498 | root | Al | 1.69 | MC |
| SRR4947499 | root | Al | 0.83 | MC |
| SRR4947501 | root | Al | 0.55 | MC |
| SRR4947503 | root | control | 3.23 | MC |
| SRR4947504 | root | control | 1.34 | MC |
| SRR4947505 | root | control | 1.50 | MC |
| SRR4947506 | root | Al | 0.64 | MC |
| SRR4947507 | root | Al | 1.96 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.51 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.56 | MC |
| SRR6502096 | root | control | 0.34 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.75 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.59 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.83 | MC |
| SRR6502106 | root | control | 1.39 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.49 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.04 | MC |
| SRR6441555 | seedling | wild_type | 0.33 | MC |
| SRR2154085 | seedling | wt | 0.51 | MC |
| SRR2154087 | seedling | wt | 1.02 | MC |
| SRR3098741 | seedling | wt | 0.23 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.33 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.76 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.32 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.05 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.67 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.29 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.32 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.23 | MC |