| SRR4457249 | 2nd_leaf | DAH4 | 3.94 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 4.82 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 4.07 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 4.14 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.13 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.91 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 4.50 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 4.74 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.63 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.65 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.20 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.38 | MC |
| SRR3745125 | anther | wt | 4.45 | MC |
| SRR3745126 | anther | wt | 5.03 | MC |
| SRR3745127 | anther | wt | 3.22 | MC |
| SRR358795 | callus | wt | 3.64 | MC |
| SRR358796 | callus | wt | 3.28 | MC |
| SRR358797 | callus | wt | 5.80 | MC |
| SRR358798 | callus | wt | 5.43 | MC |
| SRR6320473 | carpel | wt | 3.17 | MC |
| SRR7265409 | coleoptile | 3dN | 3.88 | MC |
| SRR7265416 | coleoptile | 4dN | 4.30 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.46 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.59 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.81 | MC |
| SRR7265376 | embryo | 1hA | 3.18 | MC |
| SRR7265382 | embryo | 3hA | 4.18 | MC |
| SRR7265383 | embryo | 3hA | 4.65 | MC |
| SRR7265385 | embryo | 3hN | 3.80 | MC |
| SRR7265394 | embryo | 24hA | 5.07 | MC |
| SRR2338868 | endosprem | high_temperature | 1.39 | MC |
| SRR2338869 | endosprem | high_temperature | 2.08 | MC |
| SRR976168 | flag_leaf | wild_type | 2.26 | MC |
| SRR4457235 | flag_leaf | DAH12 | 3.26 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.41 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.15 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.71 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.78 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.84 | MC |
| SRR4457242 | flag_leaf | DAH28 | 3.19 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.51 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.05 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.37 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.68 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.70 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.07 | MC |
| SRR8240826 | leaf | wild_type | 1.24 | MC |
| SRR8240819 | leaf | wild_type | 1.76 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.88 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.87 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.13 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.69 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.26 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.87 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.99 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.82 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.93 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 3.25 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.99 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.82 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.93 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 3.25 | MC |
| SRR1761528 | leaf | drought | 2.99 | MC |
| SRR1761529 | leaf | drought | 0.82 | MC |
| SRR1761530 | leaf | control | 2.93 | MC |
| SRR1761531 | leaf | control | 3.25 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.56 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.56 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.01 | MC |
| SRR6417967 | leaf | H2O_control | 2.19 | MC |
| SRR6417968 | leaf | H2O_control | 1.75 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.73 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.70 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.25 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.23 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.82 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.77 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.91 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.26 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.96 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.88 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.24 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.25 | MC |
| SRR1213692 | leaf | wt | 3.27 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.77 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.55 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.22 | MC |
| SRR6502088 | leaf | control | 2.96 | MC |
| SRR6502089 | leaf | control | 1.82 | MC |
| SRR6502090 | leaf | control | 1.52 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.00 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.06 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.30 | MC |
| SRR6502100 | leaf | control | 3.20 | MC |
| SRR6502101 | leaf | control | 1.91 | MC |
| SRR6502102 | leaf | control | 4.23 | MC |
| SRR5856927 | leaf | control | 2.07 | MC |
| SRR5856930 | leaf | salt | 1.66 | MC |
| SRR5856931 | leaf | salt | 1.03 | MC |
| SRR5856932 | leaf | salt | 1.04 | MC |
| SRR5856933 | leaf | control | 1.95 | MC |
| SRR5856934 | leaf | control | 1.89 | MC |
| SRR5856935 | leaf | control | 1.35 | MC |
| SRR5856936 | leaf | salt | 0.77 | MC |
| SRR5856937 | leaf | salt | 1.23 | MC |
| SRR5856938 | leaf | salt | 0.81 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.58 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.30 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.26 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.66 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.70 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.48 | MC |
| SRR6168979 | leaf | none (control) | 0.21 | MC |
| SRR6168980 | leaf | none (control) | 1.21 | MC |
| SRR6168981 | leaf | none (control) | 1.73 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.33 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.06 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.74 | MC |
| SRR5110429 | panicle | Dawn | 4.40 | MC |
| SRR5110430 | panicle | Dawn | 2.75 | MC |
| SRR5110432 | panicle | Dawn | 1.10 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.88 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.95 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.53 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.23 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.39 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.90 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.81 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.71 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.80 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.59 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.24 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.40 | MC |
| SRR5110445 | panicle | Dusk | 4.07 | MC |
| SRR5110446 | panicle | Dusk | 1.97 | MC |
| SRR5110447 | panicle | Dusk | 1.80 | MC |
| SRR5110448 | panicle | Dusk | 5.28 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.19 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.84 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.72 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.20 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.23 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.57 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.34 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.98 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.96 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.48 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.13 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.61 | MC |
| SRR4947479 | root | control | 3.43 | MC |
| SRR4947482 | root | Al | 1.57 | MC |
| SRR4947483 | root | Al | 2.81 | MC |
| SRR4947491 | root | Al | 2.08 | MC |
| SRR4947498 | root | Al | 3.09 | MC |
| SRR4947502 | root | control | 5.14 | MC |
| SRR4947507 | root | Al | 2.06 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.37 | MC |
| SRR2154083 | seedling | wt | 0.31 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.54 | MC |
| SRR1944583 | seedling | no_treatment | 4.13 | MC |
| SRR358793 | seedling | wt | 3.67 | MC |
| SRR358794 | seedling | wt | 3.18 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.42 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.61 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.12 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.69 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.78 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.80 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.90 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.34 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.44 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.72 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.45 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.34 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.99 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.95 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 5.77 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 8.08 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 8.34 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 5.38 | MC |